Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0010/figures/sub-0010_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0010/ses-02/func/sub-0010_ses-02_task-faces_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5aad18fdf9f0be67720fc6a5ca014d2f

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime15:09:16.105000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.997361, 0.0161414, 0.0707913, -0.0092261, 0.995247, -0.0969464]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-faces_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0782219
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-faces_acq-ap-mb8
SeriesNumber16
ShimSetting[4175, -7704, -7229, 677, -5, 36, -59, 71]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamefaces
TotalReadoutTime0.03969
TxRefAmp231.755
WipMemBlock0b4f7015-cc4e-454a-bcde-31a578d00db3||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.6758453845977783, -0.024752963334321976, 0.19445312023162842, 112.56181335449219], [-0.04330630600452423, 2.6701745986938477, -0.2593010663986206, -74.79104614257812], [0.18992789089679718, 0.26010024547576904, 2.680475950241089, -55.12187194824219], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0006092763157894737
aqi0.020397296381578948
dummy_trs2
dvarsnstd36.93265446336996
dvarsstd1.2547951516245879
dvarsvstd0.9931917662349076
efc0.4887
fber6351.4453
fdmean0.08162173235363727
fdnum19
fdperc2.0833333333333335
fwhmavg2.30088809772891
fwhmx2.244041764679693
fwhmy2.504578122104386
fwhmz2.1540444064026514
gcor0.00702048
gsrx-0.018755286931991577
gsry0.040273673832416534
sizet912
sizex82
sizey82
sizez56
snr4.154788376886569
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk17.7636
summarybgmad44.8991
summarybgmean208.2362
summarybgmedian51.0
summarybgn295995.0
summarybgp0516.0
summarybgp951046.0
summarybgstdv412.4663
summaryfgk3.0587
summaryfgmad537.2775
summaryfgmean3874.0489
summaryfgmedian4046.0
summaryfgn80549.0
summaryfgp051509.0
summaryfgp955024.0
summaryfgstdv973.8101
tsnr44.578663651132956
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