Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0007/figures/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0007/ses-03/func/sub-0007_ses-03_task-alignvideo_acq-mb8_run-03_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum665c06c7f8bab105bd4bf39d3a57f0d4

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime16:44:12.952500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998733, -0.00393515, 0.0501701, 0.00156882, 0.998888, 0.0471187]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-03_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0828191
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-03_task-alignvideo_acq-ap-mb8
SeriesNumber42
ShimSetting[4167, -7732, -7228, 686, 25, -207, -5, 45]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp229.334
WipMemBlock1ba8f5be-bf3b-499c-81b9-12736ee8ef6c||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.679527521133423, 0.004209025762975216, 0.13580918312072754, 113.1746826171875], [0.010557732544839382, 2.679943561553955, 0.1268467754125595, -101.2837905883789], [0.1346026211977005, -0.12641602754592896, 2.6935973167419434, -61.25643539428711], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 1065]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0020017746478873237
aqi0.02706556469483568
dummy_trs0
dvarsnstd38.745902531080795
dvarsstd1.2444369314097747
dvarsvstd1.0165893695206765
efc0.4633
fber5945.3438
fdmean0.10590612597339291
fdnum59
fdperc5.539906103286385
fwhmavg2.46065140063458
fwhmx2.392737579316327
fwhmy2.681116663349925
fwhmz2.308099959237488
gcor0.00914794
gsrx-0.01450375560671091
gsry0.027610594406723976
sizet1065
sizex82
sizey82
sizez56
snr3.6916696859504987
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk29.2915
summarybgmad39.1101
summarybgmean166.6798
summarybgmedian47.0
summarybgn303289.0
summarybgp0516.0
summarybgp95748.0
summarybgstdv322.7498
summaryfgk2.0688
summaryfgmad570.6878
summaryfgmean3424.6915
summaryfgmedian3639.0
summaryfgn73255.0
summaryfgp05999.0
summaryfgp954548.0
summaryfgstdv985.7261
tsnr35.55768109392375
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