Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0005/figures/sub-0005_ses-03_task-social_acq-mb8_run-05_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0005/ses-03/func/sub-0005_ses-03_task-social_acq-mb8_run-05_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume96d168c1593122f11add27847f5e90a

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime15:57:24.985000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999698, 0.0101141, -0.0224029, -0.0104692, 0.999821, -0.0157909]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-05_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0700845
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-05_task-social_acq-ap-mb8
SeriesNumber20
ShimSetting[4140, -7776, -7322, 568, -73, -90, -52, 96]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp253.883
WipMemBlocke0b9d97a-c32d-4b01-8df2-f4332fa43b52||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.6821162700653076, -0.028088146820664406, -0.06004573032259941, 112.98143768310547], [-0.027135411277413368, 2.6824452877044678, -0.04325590655207634, -97.12892150878906], [-0.06010532006621361, 0.04236593097448349, 2.6989855766296387, -90.65601348876953], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.002981976878612717
aqi0.035814189248554916
dummy_trs7
dvarsnstd35.903481050995374
dvarsstd1.1826032413194443
dvarsvstd1.0086493340740719
efc0.4902
fber6879.3477
fdmean0.15971563067832173
fdnum165
fdperc19.07514450867052
fwhmavg2.609334260802612
fwhmx2.5300503033152637
fwhmy2.6803451179137743
fwhmz2.617607361178798
gcor0.009101
gsrx0.009236123412847519
gsry0.03303949162364006
sizet865
sizex82
sizey82
sizez56
snr4.082350073507685
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk23.2726
summarybgmad42.8618
summarybgmean203.1882
summarybgmedian48.0
summarybgn294098.0
summarybgp0514.0
summarybgp95968.0
summarybgstdv413.0378
summaryfgk2.5564
summaryfgmad611.821
summaryfgmean3860.2097
summaryfgmedian4021.0
summaryfgn82446.0
summaryfgp051533.0
summaryfgp955076.0
summaryfgstdv984.9659
tsnr32.50352877518162
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