Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0002/figures/sub-0002_ses-01_task-social_acq-mb8_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0002/ses-01/func/sub-0002_ses-01_task-social_acq-mb8_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum7dc982810aa6dd62b80bd400c585cf6f

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime10:14:8.977500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.995306, -0.0321507, 0.0912771, 0.00990197, 0.972084, 0.234426]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-04_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0712836
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-04_task-social_acq-ap-mb8
SeriesNumber18
ShimSetting[4156, -7784, -7285, 498, -89, -320, 40, 71]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp233.707
WipMemBlock9aa9bfd5-b2a7-484d-9b91-3004bcd5c85a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.6703343391418457, 0.0265662744641304, 0.2599179148674011, 109.67444610595703], [0.08625806123018265, 2.6080291271209717, 0.6275385618209839, -108.73139190673828], [0.24488967657089233, -0.6289473176002502, 2.613166332244873, -43.26124572753906], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.023670562571756603
aqi0.07427375005740527
dummy_trs1
dvarsnstd38.199859209206934
dvarsstd1.2058436276206905
dvarsvstd1.2418865155632186
efc0.4443
fber7651.9805
fdmean0.30523268946058874
fdnum272
fdperc31.228473019517796
fwhmavg2.7351320701443336
fwhmx2.626582937377383
fwhmy3.0724318358384255
fwhmz2.5063814372171924
gcor0.0113894
gsrx-0.0129121458157897
gsry0.030706550925970078
sizet871
sizex82
sizey82
sizez56
snr3.644391341296897
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk27.3841
summarybgmad38.5051
summarybgmean162.708
summarybgmedian46.0
summarybgn308272.0
summarybgp0515.0
summarybgp95696.0
summarybgstdv319.4961
summaryfgk1.6233
summaryfgmad598.3125
summaryfgmean3690.5325
summaryfgmedian3991.0
summaryfgn68272.0
summaryfgp051027.0
summaryfgp954876.0
summaryfgstdv1095.0994
tsnr21.693758074077778
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