Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0129/figures/sub-0129_ses-04_task-social_acq-mb8_run-06_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0129/ses-04/func/sub-0129_ses-04_task-social_acq-mb8_run-06_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum86b4ee9581175b9304a535971e81df87

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime14:12:3.965000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.996972, -0.0689398, -0.0359629, 0.0718137, 0.99371, 0.0859244]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-06_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.120818
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-06_task-social_acq-ap-mb8
SeriesNumber22
ShimSetting[4227, -7757, -7256, 128, -162, -15, 90, 132]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp252.89
WipMemBlock54878255-592c-4f63-8090-9e5a7db1c018||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6748039722442627, 0.19267088174819946, -0.0804954543709755, 105.99474334716797], [0.18496042490005493, 2.6660516262054443, 0.23826664686203003, -104.41674041748047], [-0.09648595750331879, -0.23052893579006195, 2.6882615089416504, -67.41300964355469], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0014858371559633027
aqi0.02230390160550459
dummy_trs0
dvarsnstd42.63033598615376
dvarsstd1.2365953775200917
dvarsvstd1.0103174298737088
efc0.4977
fber4001.0886
fdmean0.06327899471109653
fdnum15
fdperc1.7201834862385321
fwhmavg2.495889734290454
fwhmx2.3549057620364895
fwhmy2.8050782967580856
fwhmz2.3276851440767863
gcor0.0256038
gsrx-0.026089983060956
gsry0.047152794897556305
sizet872
sizex82
sizey82
sizez56
snr3.699206863148716
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk14.8628
summarybgmad47.0233
summarybgmean192.1718
summarybgmedian50.0
summarybgn298329.0
summarybgp0515.0
summarybgp95909.0
summarybgstdv333.9447
summaryfgk2.074
summaryfgmad490.0818
summaryfgmean2973.6409
summaryfgmedian3171.0
summaryfgn78215.0
summaryfgp05884.0
summaryfgp953932.0
summaryfgstdv857.2053
tsnr36.62722997833043
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