Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0124/figures/sub-0124_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0124/ses-01/dwi/sub-0124_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum00b56796b63d9cceb3da3c05f19f880c

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime17:25:0.050000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.995602, -0.0855628, 0.038149, 0.0708417, 0.954079, 0.291057]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.217487
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4229, -7768, -7250, 268, -103, 1, -43, 76]
SliceThickness1.7
SliceTiming[0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp226.948
WipMemBlockac5f4a2b-1bab-41af-be2a-be4dab1e6fdb||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.7067465782165527, 0.12144289910793304, 0.10421140491962433, 110.09729766845703], [0.14667904376983643, 1.6355645656585693, 0.4880262613296509, -111.87997436523438], [0.06539832800626755, -0.49895456433296204, 1.6251063346862793, -40.35987091064453], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.17
bdiffsmean0.0259
bdiffsmedian0.0208
bdiffsmin0.0006
efcshell010.3911
efcshell020.4228
efcshell030.4332
efcshell040.4665
efcshell050.5057
fadegenerate0.0
fanans0.0
fbershell014986.5459
fbershell022153.5662
fbershell031031.6998
fbershell04326.2235
fbershell05128.7201
fdmean3.2464
fdnum101
fdperc98.05825242718447
ndc0.7093
sigmacc884.3722
sigmapca232.1551
sigmapiesno39.6182
snrccshell06.57
snrccshell1best6.49
snrccshell1worst6.49
snrccshell2best4.81
snrccshell2worst3.1
snrccshell3best3.22
snrccshell3worst1.82
snrccshell4best2.24
snrccshell4worst1.03
spikesglobal70.32
spikesslicei287.67
spikesslicej125.0
spikesslicek248.66
summarybgk144.4262
summarybgmad45.9607
summarybgmean362.8905
summarybgmedian118.0
summarybgn1283194.0
summarybgp0566.0
summarybgp951606.0
summarybgstdv932.3111
summaryfgk6.3957
summaryfgmad4183.9035
summaryfgmean10305.5012
summaryfgmedian8878.0
summaryfgn304406.0
summaryfgp052292.0
summaryfgp9522854.0
summaryfgstdv6453.3647
summarywmk24.1483
summarywmmad2456.6719
summarywmmean7080.3474
summarywmmedian7041.0
summarywmn89657.0
summarywmp05787.0
summarywmp9512602.0
summarywmstdv4305.8924
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