Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0123/figures/sub-0123_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0123/ses-01/dwi/sub-0123_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1f4559744518e283c0be4f74ab673659

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime08:54:47.077500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999968, -0.00471342, 0.00650457, 0.00453775, 0.999632, 0.0267622]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.190929
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4239, -7734, -7338, 134, -118, 58, -91, 101]
SliceThickness1.7
SliceTiming[0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp228.75
WipMemBlockfcb60719-5ab2-45a0-a900-8cf6e22b819c||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.7142304182052612, 0.007779006380587816, 0.011268126778304577, 120.57695007324219], [0.008080150000751019, 1.7136540412902832, 0.045444097369909286, -111.9788589477539], [0.011150683276355267, -0.04587806016206741, 1.699355125427246, -90.38655853271484], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.1153
bdiffsmean0.05
bdiffsmedian0.0429
bdiffsmin0.0001
efcshell010.3893
efcshell020.4182
efcshell030.4287
efcshell040.4606
efcshell050.4966
fadegenerate0.0
fanans0.0
fbershell014753.9263
fbershell022003.491
fbershell03978.4711
fbershell04319.9649
fbershell05133.5986
fdmean2.7607
fdnum101
fdperc98.05825242718447
ndc0.8462
sigmacc923.6612
sigmapca233.5881
sigmapiesno40.6086
snrccshell05.57
snrccshell1best5.49
snrccshell1worst5.49
snrccshell2best4.05
snrccshell2worst2.51
snrccshell3best3.4
snrccshell3worst1.42
snrccshell4best2.13
snrccshell4worst0.73
spikesglobal62.74
spikesslicei182.36
spikesslicej34.25
spikesslicek190.21
summarybgk112.4989
summarybgmad45.9607
summarybgmean525.3095
summarybgmedian120.0
summarybgn1311437.0
summarybgp0568.0
summarybgp952504.0
summarybgstdv1601.1792
summaryfgk6.8765
summaryfgmad4387.02
summaryfgmean10328.6087
summaryfgmedian8790.0
summaryfgn276163.0
summaryfgp052453.0
summaryfgp9523001.0
summaryfgstdv6678.6534
summarywmk19.2863
summarywmmad2587.8822
summarywmmean6955.3503
summarywmmedian6627.0
summarywmn89656.0
summarywmp05962.0
summarywmp9513238.0
summarywmstdv4042.2174
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