Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0102/figures/sub-0102_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0102/ses-01/dwi/sub-0102_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumcf8f10ae1d483853615125e62e56ac1b

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime15:46:12.052500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.995652, -0.0103441, -0.0925794, 0.0180745, 0.996381, 0.0830555]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.277863
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4208, -7799, -7278, 251, -115, -40, -44, 108]
SliceThickness1.7
SliceTiming[0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp260.66
WipMemBlock6af923b5-1068-44b5-94e3-50f43e1d308f||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.3243
bdiffsmean0.1046
bdiffsmedian0.0986
bdiffsmin0.0009
efcshell010.4101
efcshell020.4496
efcshell030.4582
efcshell040.4965
efcshell050.5253
fadegenerate0.0
fanans0.0
fbershell013259.2612
fbershell021471.9851
fbershell03564.0654
fbershell04152.5677
fbershell0549.7931
fdmean31.1969
fdnum102
fdperc99.02912621359224
ndc0.7625
sigmacc2165.3405
sigmapca195.4598
sigmapiesno44.5704
snrccshell03.16
snrccshell1best4.15
snrccshell1worst4.15
snrccshell2best1.62
snrccshell2worst1.47
snrccshell3best1.01
snrccshell3worst0.87
snrccshell4best0.54
snrccshell4worst0.51
spikesglobal107.97
spikesslicei422.08
spikesslicej493.14
spikesslicek354.67
summarybgk47.1717
summarybgmad97.8517
summarybgmean908.8876
summarybgmedian151.0
summarybgn1260623.0
summarybgp0573.0
summarybgp954477.0
summarybgstdv2249.6953
summaryfgk3.1448
summaryfgmad4455.2197
summaryfgmean10372.857
summaryfgmedian9151.0
summaryfgn326977.0
summaryfgp053906.0
summaryfgp9520851.0
summaryfgstdv5489.5789
summarywmk3.1318
summarywmmad4461.1501
summarywmmean10368.8168
summarywmmedian9148.0
summarywmn325998.0
summarywmp053898.0
summarywmp9520851.0
summarywmstdv5490.7872
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