Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0099/figures/sub-0099_ses-04_task-social_acq-mb8_run-03_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0099/ses-04/func/sub-0099_ses-04_task-social_acq-mb8_run-03_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum993870300566814baf249a706f511e28

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime13:54:46.970000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998824, 0.0160672, 0.0457425, -0.0190041, 0.997736, 0.0645119]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-03_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0843498
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-03_task-social_acq-ap-mb8
SeriesNumber16
ShimSetting[4251, -7792, -7249, 236, -79, -213, -121, 53]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp234.66
WipMemBlock8db45ae8-4027-47a2-9410-860c4b6e453a||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.679771900177002, -0.05098650977015495, 0.12042661011219025, 111.4423599243164], [-0.04310700297355652, 2.6768527030944824, 0.1763242781162262, -99.48847961425781], [0.12272387742996216, -0.17308060824871063, 2.6915435791015625, -81.3580093383789], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0007960574712643679
aqi0.04609073517241379
dummy_trs2
dvarsnstd38.002099088849256
dvarsstd1.0799833378596095
dvarsvstd0.9348145081818184
efc0.4381
fber7370.4951
fdmean0.12792651458289503
fdnum112
fdperc12.873563218390805
fwhmavg2.4576504245085737
fwhmx2.299626581536266
fwhmy2.651935845863832
fwhmz2.421388846125623
gcor0.00448027
gsrx-0.015995945781469345
gsry0.028911493718624115
sizet870
sizex82
sizey82
sizez56
snr4.014601679917965
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk23.0189
summarybgmad26.6664
summarybgmean129.2625
summarybgmedian35.0
summarybgn312899.0
summarybgp0514.0
summarybgp95604.0
summarybgstdv261.8152
summaryfgk2.5194
summaryfgmad420.5545
summaryfgmean2889.1488
summaryfgmedian3042.0
summaryfgn63645.0
summaryfgp051068.0
summaryfgp953764.0
summaryfgstdv757.728
tsnr32.564456978812814
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