Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0099/figures/sub-0099_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0099/ses-01/dwi/sub-0099_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum788f45c7604ee9cf7f72b4cf9dcd810c

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime09:01:1.047500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999658, -0.00311963, 0.0259546, -0.00244263, 0.977363, 0.211554]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.215922
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4237, -7765, -7269, 232, -116, -125, -87, 115]
SliceThickness1.7
SliceTiming[0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.335, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.335, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.335, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp232.71
WipMemBlock2b5da486-30f9-4442-8412-2127f68a2926||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.7136999368667603, -0.004187361337244511, 0.04424598440527916, 123.66403198242188], [0.0053479354828596115, 1.6754798889160156, 0.35962679982185364, -119.62034606933594], [0.04449361190199852, -0.362664133310318, 1.660936713218689, -51.075592041015625], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103], 'AcquisitionTime': ['090101.047500', '090105.157500', '090109.267500', '090113.377500', '090117.487500', '090121.597500', '090125.707500', '090129.817500', '090133.927500', '090138.037500', '090142.147500', '090146.257500', '090150.367500', '090154.477500', '090158.587500', '090202.697500', '090206.807500', '090210.917500', '090215.027500', '090219.137500', '090223.247500', '090227.357500', '090231.467500', '090235.577500', '090239.687500', '090243.797500', '090247.907500', '090252.017500', '090256.127500', '090300.237500', '090304.347500', 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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.3929
bdiffsmean0.1496
bdiffsmedian0.1466
bdiffsmin0.0012
efcshell010.36
efcshell020.4072
efcshell030.4266
efcshell040.4548
efcshell050.457
fadegenerate0.0
fanans0.0
fbershell014280.3364
fbershell021766.9406
fbershell03672.1996
fbershell04177.7286
fbershell0561.2511
fdmean38.153
fdnum101
fdperc98.05825242718447
ndc0.2964
sigmacc577.4736
sigmapca177.5827
sigmapiesno39.9483
snrccshell011.18
snrccshell1best11.49
snrccshell1worst11.49
snrccshell2best7.17
snrccshell2worst6.81
snrccshell3best5.65
snrccshell3worst4.93
snrccshell4best3.31
snrccshell4worst3.33
spikesglobal79.85
spikesslicei363.86
spikesslicej244.86
spikesslicek237.27
summarybgk67.6339
summarybgmad48.9259
summarybgmean502.9043
summarybgmedian112.0
summarybgn1338089.0
summarybgp0563.0
summarybgp952260.0
summarybgstdv1345.6543
summaryfgk2.2411
summaryfgmad3383.2983
summaryfgmean8794.9788
summaryfgmedian7915.0
summaryfgn249511.0
summaryfgp053503.0
summaryfgp9517047.0
summaryfgstdv4223.8789
summarywmk2.2817
summarywmmad3368.4722
summarywmmean8774.4224
summarywmmedian7898.0
summarywmn248729.0
summarywmp053493.0
summarywmp9516996.0
summarywmstdv4216.2288
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