Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0098/figures/sub-0098_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0098/ses-01/dwi/sub-0098_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1dfeb71b4563b3512adb855ef43efadf

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime13:50:4.060000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.994584, -0.103938, 0.000457336, 0.0978703, 0.937981, 0.332584]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.233038
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4213, -7798, -7146, 288, -142, 139, -44, 95]
SliceThickness1.7
SliceTiming[0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp246.026
WipMemBlock1c727879-61d1-4e2c-9f93-68a5650acbff||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.3378
bdiffsmean0.0835
bdiffsmedian0.0566
bdiffsmin0.0012
efcshell010.4179
efcshell020.4451
efcshell030.4558
efcshell040.5006
efcshell050.5263
fadegenerate0.0
fanans0.0
fbershell013740.7363
fbershell021686.1111
fbershell03661.5658
fbershell04163.0168
fbershell0556.1143
fdmean33.7892
fdnum101
fdperc98.05825242718447
ndc0.6475
sigmacc1349.168
sigmapca184.2264
sigmapiesno43.58
snrccshell04.89
snrccshell1best6.27
snrccshell1worst6.27
snrccshell2best2.62
snrccshell2worst2.24
snrccshell3best1.32
snrccshell3worst1.11
snrccshell4best0.89
snrccshell4worst0.59
spikesglobal66.63
spikesslicei162.67
spikesslicej144.69
spikesslicek167.43
summarybgk24.24
summarybgmad75.6127
summarybgmean683.9405
summarybgmedian133.0
summarybgn1275414.0
summarybgp0564.0
summarybgp953558.0
summarybgstdv1507.361
summaryfgk1.1162
summaryfgmad3814.7355
summaryfgmean9404.8357
summaryfgmedian8650.0
summaryfgn312186.0
summaryfgp053752.0
summaryfgp9517479.0
summaryfgstdv4266.062
summarywmk1.1253
summarywmmad3810.2877
summarywmmean9393.1296
summarywmmedian8639.0
summarywmn311775.0
summarywmp053741.0
summarywmp9517474.0
summarywmstdv4266.792
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