Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0089/figures/sub-0089_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0089/ses-03/func/sub-0089_ses-03_task-social_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum4cffcdb79dfa75d877be64e78889e037

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime13:50:37.782500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999811, 0.0066076, 0.0182899, -0.0122156, 0.945189, 0.326294]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0928545
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-social_acq-ap-mb8
SeriesNumber8
ShimSetting[4148, -7805, -7267, 620, -36, -270, 39, 116]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp229.77
WipMemBlock9393b5ca-6023-4156-90fb-030b648bdcb3||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.682419538497925, -0.03277366980910301, 0.04085487127304077, 112.1220474243164], [-0.017727700993418694, 2.5358738899230957, 0.8814308047294617, -115.52774810791016], [0.0490705668926239, -0.8754233121871948, 2.5517466068267822, -30.62375259399414], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0002415632183908046
aqi0.0202540108045977
dummy_trs2
dvarsnstd42.12810143215182
dvarsstd1.2797217706559265
dvarsvstd0.9810303658342925
efc0.4438
fber7583.4414
fdmean0.07257640293462861
fdnum5
fdperc0.5747126436781609
fwhmavg2.578784606627996
fwhmx2.564378484314998
fwhmy2.83683093236468
fwhmz2.3351444032043105
gcor0.00656787
gsrx-0.02144174464046955
gsry0.01897658221423626
sizet870
sizex82
sizey82
sizez56
snr3.3968163813553276
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk37.7258
summarybgmad32.8643
summarybgmean167.8202
summarybgmedian40.0
summarybgn311349.0
summarybgp0514.0
summarybgp95806.0
summarybgstdv357.5116
summaryfgk1.679
summaryfgmad561.9301
summaryfgmean3246.6046
summaryfgmedian3496.0
summaryfgn65195.0
summaryfgp05694.0
summaryfgp954390.0
summaryfgstdv1029.1911
tsnr41.655387077946216
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