Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0079/figures/sub-0079_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0079/ses-01/dwi/sub-0079_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5suma352ff9922fe12ab19bb87363af4f5db

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime12:38:17.057500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.997608, -0.0158332, 0.0672836, -0.00191531, 0.966706, 0.255884]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.305708
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4182, -7754, -7285, 386, -10, -33, 142, 41]
SliceThickness1.7
SliceTiming[0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp261.034
WipMemBlock5f2f4b5c-76c0-4d23-9b4f-09f0b7b3cc66||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.2284
bdiffsmean0.0972
bdiffsmedian0.1112
bdiffsmin0.0004
efcshell010.4076
efcshell020.4572
efcshell030.461
efcshell040.481
efcshell050.5172
fadegenerate0.0
fanans0.0
fbershell013404.1077
fbershell021406.2421
fbershell03583.0162
fbershell04168.872
fbershell0565.8581
fdmean4.45
fdnum100
fdperc97.0873786407767
ndc0.8356
sigmacc1283.9335
sigmapca249.4046
sigmapiesno43.9101
snrccshell03.85
snrccshell1best3.84
snrccshell1worst3.84
snrccshell2best2.8
snrccshell2worst1.78
snrccshell3best1.2
snrccshell3worst1.05
snrccshell4best0.78
snrccshell4worst0.68
spikesglobal115.86
spikesslicei679.78
spikesslicej704.61
spikesslicek503.27
summarybgk115.0903
summarybgmad71.1649
summarybgmean905.4942
summarybgmedian142.0
summarybgn1256659.0
summarybgp0574.0
summarybgp953779.0
summarybgstdv3252.8472
summaryfgk5.8192
summaryfgmad5364.0548
summaryfgmean11742.8615
summaryfgmedian9225.0
summaryfgn330941.0
summaryfgp053092.0
summaryfgp9530131.0
summaryfgstdv8727.5372
summarywmk36.46
summarywmmad2372.1635
summarywmmean6484.5881
summarywmmedian6268.0
summarywmn95412.0
summarywmp052520.0
summarywmp9511094.0
summarywmstdv3253.8348
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