Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0069/figures/sub-0069_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0069/ses-01/dwi/sub-0069_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum0fa460fe460930d0d085a68b16514af1

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime15:46:45.065000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999478, 0.0217656, 0.0238606, -0.0259977, 0.98055, 0.194542]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.21205
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4155, -7758, -7253, 572, -57, -102, 89, 46]
SliceThickness1.7
SliceTiming[0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.8175, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp234.688
WipMemBlock0911bcbf-cdb6-420b-a176-1b7412880a9f||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.113
bdiffsmean0.0263
bdiffsmedian0.0193
bdiffsmin0.0006
efcshell010.4208
efcshell020.4341
efcshell030.4433
efcshell040.4716
efcshell050.5048
fadegenerate0.0
fanans0.0
fbershell014977.7979
fbershell022283.4207
fbershell031183.4961
fbershell04406.8987
fbershell05166.8979
fdmean2.4171
fdnum98
fdperc95.14563106796116
ndc0.8952
sigmacc1335.8246
sigmapca247.6764
sigmapiesno42.9197
snrccshell04.22
snrccshell1best4.19
snrccshell1worst4.19
snrccshell2best3.01
snrccshell2worst1.95
snrccshell3best2.24
snrccshell3worst1.06
snrccshell4best1.69
snrccshell4worst0.55
spikesglobal72.77
spikesslicei265.41
spikesslicej116.44
spikesslicek240.24
summarybgk254.3054
summarybgmad56.3389
summarybgmean565.8722
summarybgmedian131.0
summarybgn1258553.0
summarybgp0571.0
summarybgp952451.0
summarybgstdv2019.422
summaryfgk6.3757
summaryfgmad5155.0079
summaryfgmean11370.9808
summaryfgmedian10019.0
summaryfgn329047.0
summaryfgp053760.0
summaryfgp9523117.0
summaryfgstdv6536.9359
summarywmk16.2997
summarywmmad2791.74
summarywmmean7750.4101
summarywmmedian7495.0
summarywmn107624.0
summarywmp053336.0
summarywmp9512941.0
summarywmstdv3396.5175
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