Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0061/figures/sub-0061_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0061/ses-01/dwi/sub-0061_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum8d898b35b66c2b99678d282621eb0880

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime12:23:15.025000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.997444, -0.0640194, 0.031733, 0.0529721, 0.960586, 0.272888]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.204055
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4148, -7760, -7284, 535, -92, -98, 15, 65]
SliceThickness1.7
SliceTiming[0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp231.122
WipMemBlock1cc06d05-da81-4296-b4e7-940bf751b1f5||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.7099040746688843, 0.09080925583839417, 0.0815189927816391, 110.2899398803711], [0.10974759608507156, 1.6467196941375732, 0.4598654806613922, -123.19940185546875], [0.05439934507012367, -0.46780726313591003, 1.6345881223678589, -26.123125076293945], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.1161
bdiffsmean0.0361
bdiffsmedian0.0215
bdiffsmin0.0015
efcshell010.3928
efcshell020.4206
efcshell030.4304
efcshell040.4628
efcshell050.4995
fadegenerate0.0
fanans0.0
fbershell015169.9551
fbershell022250.6899
fbershell031135.5536
fbershell04376.0987
fbershell05156.0403
fdmean3.3125
fdnum100
fdperc97.0873786407767
ndc0.9129
sigmacc1129.7429
sigmapca235.7113
sigmapiesno40.6086
snrccshell05.28
snrccshell1best5.22
snrccshell1worst5.22
snrccshell2best3.84
snrccshell2worst2.37
snrccshell3best2.69
snrccshell3worst1.39
snrccshell4best1.92
snrccshell4worst0.79
spikesglobal71.32
spikesslicei283.39
spikesslicej211.47
spikesslicek237.27
summarybgk272.9235
summarybgmad51.8911
summarybgmean452.5311
summarybgmedian124.0
summarybgn1299371.0
summarybgp0568.0
summarybgp952031.0
summarybgstdv1343.2187
summaryfgk5.7394
summaryfgmad4516.0064
summaryfgmean11108.6824
summaryfgmedian9676.0
summaryfgn288229.0
summaryfgp053480.0
summaryfgp9523585.0
summaryfgstdv6517.5096
summarywmk23.7186
summarywmmad2472.9805
summarywmmean7615.4484
summarywmmedian7643.0
summarywmn90744.0
summarywmp052471.0
summarywmp9512339.0
summarywmstdv3477.4034
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