Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0060/figures/sub-0060_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0060/ses-01/dwi/sub-0060_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumcac13c392bc8dc7e40e3843282a1361f

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime16:39:16.080000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.997984, 0.0628565, 0.00878806, -0.0624382, 0.947495, 0.313617]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.243229
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4152, -7745, -7300, 740, -53, 24, -9, 72]
SliceThickness1.7
SliceTiming[0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp233.487
WipMemBlock2b1d9707-ba7b-4d93-b921-97318d5fb59d||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.710829496383667, -0.10703682899475098, -0.01935654692351818, 127.83380889892578], [-0.10775398463010788, 1.6242765188217163, 0.5330062508583069, -103.64447784423828], [0.015065246261656284, -0.5376285910606384, 1.6141653060913086, -22.923351287841797], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.1205
bdiffsmean0.0625
bdiffsmedian0.0667
bdiffsmin0.0007
efcshell010.3723
efcshell020.4024
efcshell030.4127
efcshell040.4421
efcshell050.4779
fadegenerate0.0
fanans0.0
fbershell015955.8228
fbershell022596.8499
fbershell031253.6853
fbershell04400.8599
fbershell05161.7604
fdmean1.9164
fdnum100
fdperc97.0873786407767
ndc0.8307
sigmacc1772.451
sigmapca234.7652
sigmapiesno40.2785
snrccshell02.91
snrccshell1best2.92
snrccshell1worst2.92
snrccshell2best2.13
snrccshell2worst1.32
snrccshell3best1.5
snrccshell3worst0.8
snrccshell4best1.03
snrccshell4worst0.49
spikesglobal62.41
spikesslicei199.48
spikesslicej53.94
spikesslicek233.31
summarybgk127.5241
summarybgmad42.9955
summarybgmean399.6124
summarybgmedian118.0
summarybgn1315446.0
summarybgp0566.0
summarybgp951769.0
summarybgstdv1203.9711
summaryfgk5.1381
summaryfgmad4854.0397
summaryfgmean11206.6807
summaryfgmedian9627.0
summaryfgn272154.0
summaryfgp052396.0
summaryfgp9525224.0
summaryfgstdv7130.3774
summarywmk20.9022
summarywmmad2618.2755
summarywmmean7378.4582
summarywmmedian7384.0
summarywmn80303.0
summarywmp051505.0
summarywmp9512351.0
summarywmstdv3680.0285
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