Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0059/figures/sub-0059_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0059/ses-01/dwi/sub-0059_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumb92c97d61e0431cc7a21580f28452064

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime10:49:23.047500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999072, -0.0239421, 0.0358103, 0.019532, 0.992727, 0.118794]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.252006
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4158, -7753, -7260, 561, -73, -206, -5, 19]
SliceThickness1.7
SliceTiming[0, 2.12, 0.15, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.4825, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.15, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.4825, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.15, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.4825, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp246.974
WipMemBlock3ef0edcc-851c-4429-a94e-c8b1171c1159||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.712694525718689, 0.03348349407315254, 0.06526988744735718, 115.6980209350586], [0.04104360565543175, 1.7018173933029175, 0.20057354867458344, -104.75990295410156], [0.06138913333415985, -0.20364713668823242, 1.686863899230957, -49.752418518066406], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.1175
bdiffsmean0.0261
bdiffsmedian0.0262
bdiffsmin0.0007
efcshell010.4145
efcshell020.4395
efcshell030.4494
efcshell040.4796
efcshell050.5172
fadegenerate0.0
fanans0.0
fbershell014874.936
fbershell022103.7241
fbershell031034.3442
fbershell04340.6853
fbershell05140.2505
fdmean2.3535
fdnum99
fdperc96.11650485436893
ndc0.8772
sigmacc1611.5886
sigmapca245.4198
sigmapiesno42.2594
snrccshell03.48
snrccshell1best3.46
snrccshell1worst3.46
snrccshell2best2.46
snrccshell2worst1.62
snrccshell3best1.99
snrccshell3worst0.93
snrccshell4best1.29
snrccshell4worst0.5
spikesglobal78.28
spikesslicei294.52
spikesslicej197.77
spikesslicek204.58
summarybgk97.9723
summarybgmad56.3389
summarybgmean617.071
summarybgmedian131.0
summarybgn1272587.0
summarybgp0572.0
summarybgp953072.0
summarybgstdv1742.1261
summaryfgk6.2629
summaryfgmad5261.7553
summaryfgmean11546.1186
summaryfgmedian9958.0
summaryfgn315013.0
summaryfgp053174.0
summaryfgp9525207.0
summaryfgstdv7289.4503
summarywmk10.7232
summarywmmad3057.1258
summarywmmean7551.3642
summarywmmedian7557.0
summarywmn91855.0
summarywmp052839.0
summarywmp9512461.0
summarywmstdv3315.5873
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