Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0047/figures/sub-0047_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0047/ses-01/dwi/sub-0047_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum613c86f81d78d924d54622673b281470

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime17:22:45.075000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.991795, -0.127729, -0.0052188, 0.123007, 0.942427, 0.310966]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.234719
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4150, -7754, -7264, 604, -15, -134, 53, 92]
SliceThickness1.7
SliceTiming[0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.335, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.335, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.335, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp238.78
WipMemBlocke2c0ee6d-75c8-4a94-ae4c-46d265701fce||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja
dcmmetaaffine[[-1.7002207040786743, 0.2108696550130844, 0.059161633253097534, 104.94453430175781], [0.21896378695964813, 1.61558997631073, 0.5253957509994507, -118.406982421875], [-0.00894651748239994, -0.5330840945243835, 1.6156915426254272, -13.133667945861816], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.0963
bdiffsmean0.036
bdiffsmedian0.0212
bdiffsmin0.0011
efcshell010.3971
efcshell020.4152
efcshell030.4261
efcshell040.4594
efcshell050.4962
fadegenerate0.0
fanans0.0
fbershell015474.042
fbershell022310.9758
fbershell031165.1453
fbershell04389.1707
fbershell05159.5026
fdmean2.4655
fdnum99
fdperc96.11650485436893
ndc0.4568
sigmacc1404.7656
sigmapca245.9236
sigmapiesno42.5895
snrccshell03.98
snrccshell1best3.92
snrccshell1worst3.92
snrccshell2best2.84
snrccshell2worst1.82
snrccshell3best1.96
snrccshell3worst1.01
snrccshell4best1.77
snrccshell4worst0.57
spikesglobal63.94
spikesslicei254.28
spikesslicej83.05
spikesslicek213.0
summarybgk94.8655
summarybgmad54.8563
summarybgmean601.4536
summarybgmedian129.0
summarybgn1289631.0
summarybgp0570.0
summarybgp952893.0
summarybgstdv1798.8632
summaryfgk5.0005
summaryfgmad5912.6176
summaryfgmean12267.5736
summaryfgmedian10443.0
summaryfgn297969.0
summaryfgp053203.0
summaryfgp9526877.0
summaryfgstdv7809.3867
summarywmk22.2903
summarywmmad3006.7173
summarywmmean8049.8582
summarywmmedian7666.0
summarywmn91977.0
summarywmp053162.0
summarywmp9513691.0
summarywmstdv3805.5643
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