Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0039/figures/sub-0039_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0039/ses-01/dwi/sub-0039_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum0610a871b51d3b36305d54e98a755ee5

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime16:51:57.102500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.99914, 0.0296583, 0.0289639, -0.0382085, 0.929884, 0.365863]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.291776
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4141, -7788, -7184, 574, -54, -215, 44, 65]
SliceThickness1.7
SliceTiming[0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.305, 2.425, 0.455, 2.5775, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.0625, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.6375, 1.6675, 3.7875, 1.82, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp246.53
WipMemBlockfd196118-0c53-4a52-89df-e9937281e856||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.0207
bdiffsmean0.0085
bdiffsmedian0.0077
bdiffsmin0.0009
efcshell010.4064
efcshell020.4199
efcshell030.4294
efcshell040.4588
efcshell050.4941
fadegenerate0.0
fanans0.0
fbershell015328.4673
fbershell022391.5635
fbershell031225.5192
fbershell04421.6596
fbershell05171.8181
fdmean1.3532
fdnum100
fdperc97.0873786407767
ndc0.8647
sigmacc1527.0803
sigmapca240.3982
sigmapiesno41.5991
snrccshell03.98
snrccshell1best3.94
snrccshell1worst3.94
snrccshell2best2.87
snrccshell2worst1.89
snrccshell3best2.16
snrccshell3worst1.07
snrccshell4best1.66
snrccshell4worst0.59
spikesglobal57.22
spikesslicei161.81
spikesslicej61.64
spikesslicek131.76
summarybgk101.8158
summarybgmad51.8911
summarybgmean495.2564
summarybgmedian126.0
summarybgn1288124.0
summarybgp0565.0
summarybgp952462.0
summarybgstdv1317.9888
summaryfgk5.8062
summaryfgmad5086.8082
summaryfgmean11002.9699
summaryfgmedian9853.0
summaryfgn299476.0
summaryfgp052773.0
summaryfgp9522599.0
summaryfgstdv6443.0546
summarywmk18.1461
summarywmmad3070.4692
summarywmmean7560.3346
summarywmmedian7473.0
summarywmn102930.0
summarywmp051552.0
summarywmp9512905.0
summarywmstdv3844.1155
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