Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0037/figures/sub-0037_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0037/ses-01/dwi/sub-0037_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumd2918a84a8896fdb854e94250121043b

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime10:59:39.085000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.99971, 0.00470955, 0.023612, -0.00924785, 0.980567, 0.195965]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.260654
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4154, -7741, -7267, 532, -66, -112, 64, 36]
SliceThickness1.7
SliceTiming[0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.515, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.515, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.7575, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.515, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp269.307
WipMemBlock72f213e8-73a6-40df-b80a-12cb8e7be137||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.0285
bdiffsmean0.0127
bdiffsmedian0.0132
bdiffsmin0.0004
efcshell010.4192
efcshell020.4408
efcshell030.4526
efcshell040.489
efcshell050.5318
fadegenerate0.0
fanans0.0
fbershell013108.4248
fbershell021388.5104
fbershell03702.6611
fbershell04238.8897
fbershell0599.5478
fdmean1.3794
fdnum100
fdperc97.0873786407767
ndc0.9405
sigmacc1279.4857
sigmapca240.3479
sigmapiesno41.5991
snrccshell03.98
snrccshell1best3.96
snrccshell1worst3.96
snrccshell2best2.94
snrccshell2worst1.89
snrccshell3best2.2
snrccshell3worst1.06
snrccshell4best1.59
snrccshell4worst0.59
spikesglobal66.52
spikesslicei228.59
spikesslicej51.37
spikesslicek215.97
summarybgk211.446
summarybgmad60.7867
summarybgmean542.027
summarybgmedian132.0
summarybgn1274071.0
summarybgp0572.0
summarybgp952457.0
summarybgstdv1509.9238
summaryfgk6.4591
summaryfgmad4238.7597
summaryfgmean9421.8667
summaryfgmedian8048.0
summaryfgn313529.0
summaryfgp052374.0
summaryfgp9520510.0
summaryfgstdv5908.5366
summarywmk34.0392
summarywmmad2222.4207
summarywmmean6418.7559
summarywmmedian6280.0
summarywmn99777.0
summarywmp052343.0
summarywmp9510709.0
summarywmstdv3244.2894
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