Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0026/figures/sub-0026_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0026/ses-01/dwi/sub-0026_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5suma16430b3ffe4efc1c07635e181b6b81e

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime09:35:10.077500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.996761, 0.0432897, 0.0677738, -0.0450884, 0.998664, 0.0252382]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.26144
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4181, -7730, -7245, 654, 44, -90, 19, 46]
SliceThickness1.7
SliceTiming[0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.755, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.755, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.755, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp268.764
WipMemBlock39e78fde-0981-4875-a46b-e42ff0645464||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
dcmmetaaffine[[-1.708733320236206, -0.07729436457157135, 0.11320429295301437, 122.88388061523438], [-0.07421088218688965, 1.7119957208633423, 0.047960881143808365, -82.31795501708984], [0.11618375033140182, -0.043265510350465775, 1.695548415184021, -45.305503845214844], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.2695
bdiffsmean0.0794
bdiffsmedian0.0397
bdiffsmin0.0028
efcshell010.403
efcshell020.4302
efcshell030.4395
efcshell040.4676
efcshell050.4968
fadegenerate0.0
fanans0.0
fbershell014213.4741
fbershell021888.6373
fbershell03964.2007
fbershell04330.5932
fbershell05140.8415
fdmean9.1254
fdnum96
fdperc93.20388349514563
ndc0.5689
sigmacc1451.4676
sigmapca245.3285
sigmapiesno43.58
snrccshell03.72
snrccshell1best3.66
snrccshell1worst3.66
snrccshell2best2.75
snrccshell2worst1.79
snrccshell3best2.16
snrccshell3worst1.12
snrccshell4best1.41
snrccshell4worst0.8
spikesglobal80.88
spikesslicei380.13
spikesslicej263.69
spikesslicek247.67
summarybgk164.8774
summarybgmad53.3737
summarybgmean640.3851
summarybgmedian131.0
summarybgn1278351.0
summarybgp0573.0
summarybgp953056.0
summarybgstdv2042.9363
summaryfgk7.3668
summaryfgmad5098.669
summaryfgmean10970.8708
summaryfgmedian9177.0
summaryfgn309249.0
summaryfgp052992.0
summaryfgp9524604.0
summaryfgstdv7389.766
summarywmk29.5241
summarywmmad2744.2967
summarywmmean6822.8253
summarywmmedian6631.0
summarywmn104865.0
summarywmp052269.0
summarywmp9511629.0
summarywmstdv3415.7198
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