Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0015/figures/sub-0015_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0015/ses-01/dwi/sub-0015_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum9a6db4394d37fbbe43d8fa3600ad1ca2

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime15:06:26.092500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.997585, 0.0681888, 0.0131827, -0.0688832, 0.995667, 0.0624692]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNamedartmouth_brain_imaging_center
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.274897
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4155, -7774, -7168, 596, -39, -178, -82, 71]
SliceThickness1.7
SliceTiming[0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp251.157
WipMemBlock7912e055-20eb-4bfc-a422-d6c73536a8b6||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.0734
bdiffsmean0.0256
bdiffsmedian0.0226
bdiffsmin0.0013
efcshell010.3767
efcshell020.4023
efcshell030.4166
efcshell040.4551
efcshell050.4953
fadegenerate0.0
fanans0.0
fbershell014469.0835
fbershell022027.8375
fbershell031035.2018
fbershell04339.1603
fbershell05138.5366
fdmean2.532
fdnum102
fdperc99.02912621359224
ndc0.5937
sigmacc1574.5236
sigmapca208.6718
sigmapiesno38.2976
snrccshell03.77
snrccshell1best3.98
snrccshell1worst3.98
snrccshell2best2.56
snrccshell2worst1.64
snrccshell3best2.16
snrccshell3worst0.93
snrccshell4best1.56
snrccshell4worst0.48
spikesglobal52.48
spikesslicei139.55
spikesslicej47.09
spikesslicek171.88
summarybgk107.4367
summarybgmad40.0303
summarybgmean350.7072
summarybgmedian110.0
summarybgn1342159.0
summarybgp0563.0
summarybgp951457.0
summarybgstdv982.2194
summaryfgk4.4626
summaryfgmad3003.7521
summaryfgmean8119.0825
summaryfgmedian7617.0
summaryfgn245441.0
summaryfgp052524.0
summaryfgp9514839.0
summaryfgstdv3782.38
summarywmk9.4691
summarywmmad2269.864
summarywmmean7001.1022
summarywmmedian6800.0
summarywmn126902.0
summarywmp052218.0
summarywmp9512236.0
summarywmstdv3226.5249
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