Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0006/figures/sub-0006_ses-04_task-social_acq-mb8_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0006/ses-04/func/sub-0006_ses-04_task-social_acq-mb8_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum6f5846cb069a4e173907abf68128c2bc

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime10:22:42.495000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999126, -0.0153387, 0.0388862, 0.0223244, 0.98227, -0.186137]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-02_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0970193
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-02_task-social_acq-ap-mb8
SeriesNumber22
ShimSetting[4144, -7709, -7286, 590, -72, -96, -28, 100]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp241.165
WipMemBlock2b9ba35d-d52c-4016-9a13-8b2046c69088||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.68058180809021, 0.059894680976867676, 0.09542237967252731, 108.20121765136719], [0.04115255922079086, 2.635359287261963, -0.5044735670089722, -82.50225830078125], [0.1043287143111229, 0.49939101934432983, 2.650735855102539, -90.53385925292969], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00715684633027523
aqi0.03248202087155964
dummy_trs0
dvarsnstd39.40925367323759
dvarsstd1.2737817659012611
dvarsvstd1.1236030855797936
efc0.4934
fber5400.1685
fdmean0.12766747249386945
fdnum137
fdperc15.711009174311927
fwhmavg2.563771001100477
fwhmx2.494905849607718
fwhmy2.776262751990556
fwhmz2.4201444017031566
gcor0.0345358
gsrx0.0015786861767992377
gsry0.03823981061577797
sizet872
sizex82
sizey82
sizez56
snr3.8334935944424835
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk13.2141
summarybgmad39.8109
summarybgmean190.7726
summarybgmedian45.0
summarybgn297067.0
summarybgp0514.0
summarybgp95971.0
summarybgstdv362.384
summaryfgk2.2842
summaryfgmad501.4616
summaryfgmean3140.113
summaryfgmedian3327.0
summaryfgn79477.0
summaryfgp051009.0
summaryfgp954117.0
summaryfgstdv867.8713
tsnr32.25421934213955
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