Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0005/figures/sub-0005_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0005/ses-01/dwi/sub-0005_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum53ce3b63ac5e2c77ac0d647b37657a67

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime14:51:56.095000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999592, 0.0104083, -0.0265933, -0.0123875, 0.997078, -0.0753753]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.206725
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4129, -7744, -7234, 537, -87, 45, -69, 59]
SliceThickness1.7
SliceTiming[0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97, 0, 2.1225, 0.1525, 2.2725, 0.3025, 2.425, 0.455, 2.575, 0.6075, 2.7275, 0.7575, 2.88, 0.91, 3.03, 1.06, 3.1825, 1.2125, 3.3325, 1.365, 3.485, 1.515, 3.635, 1.6675, 3.7875, 1.8175, 3.94, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp257.728
WipMemBlock96112c44-cc03-4e8d-b027-eda2ac1d23dc||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.2993
bdiffsmean0.1265
bdiffsmedian0.1376
bdiffsmin0.0012
efcshell010.3926
efcshell020.4375
efcshell030.4438
efcshell040.464
efcshell050.4992
fadegenerate0.0
fanans0.0
fbershell014865.7026
fbershell021840.8596
fbershell03796.2637
fbershell04249.7228
fbershell0598.8486
fdmean6.0222
fdnum101
fdperc98.05825242718447
ndc0.9452
sigmacc894.0091
sigmapca257.215
sigmapiesno44.9006
snrccshell05.85
snrccshell1best5.78
snrccshell1worst5.78
snrccshell2best4.06
snrccshell2worst2.4
snrccshell3best2.0
snrccshell3worst1.24
snrccshell4best0.96
snrccshell4worst0.84
spikesglobal93.49
spikesslicei529.96
spikesslicej193.49
spikesslicek451.26
summarybgk72.3034
summarybgmad69.6823
summarybgmean1177.0955
summarybgmedian144.0
summarybgn1308238.0
summarybgp0577.0
summarybgp956037.0
summarybgstdv3808.1727
summaryfgk3.7366
summaryfgmad6821.4528
summaryfgmean14344.6831
summaryfgmedian11132.0
summaryfgn279362.0
summaryfgp053834.0
summaryfgp9536874.0
summaryfgstdv10505.7721
summarywmk32.8731
summarywmmad2898.4873
summarywmmean7868.8594
summarywmmedian7586.0
summarywmn79466.0
summarywmp053303.0
summarywmp9513409.0
summarywmstdv3667.734
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