Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0004/figures/sub-0004_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0004/ses-01/dwi/sub-0004_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum469cb27760838111fb56974f35ad2025

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime09:49:56.110000
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999495, 0.0148547, -0.0280778, -0.0054078, 0.950587, 0.310411]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.254677
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4126, -7767, -7245, 552, -103, -235, 108, 132]
SliceThickness1.7
SliceTiming[0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.755, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.755, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675, 0, 2.12, 0.15, 2.27, 0.3025, 2.4225, 0.4525, 2.575, 0.605, 2.725, 0.755, 2.8775, 0.9075, 3.0275, 1.06, 3.18, 1.21, 3.3325, 1.3625, 3.4825, 1.5125, 3.635, 1.665, 3.785, 1.8175, 3.9375, 1.9675]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp230.35
WipMemBlock7c0f6ac9-fd23-4818-8f3f-9b9b15980a74||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
dcmmetaaffine[[-1.7134206295013428, -0.00927051529288292, -0.05321246385574341, 124.84996795654297], [-0.02546525187790394, 1.6295779943466187, 0.5271736979484558, -100.16651916503906], [-0.04813334718346596, -0.5321325659751892, 1.6153192520141602, -2.067554473876953], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103], 'AcquisitionTime': ['094956.110000', '095000.220000', '095004.330000', '095008.440000', '095012.550000', '095016.660000', '095020.770000', '095024.880000', '095028.990000', '095033.100000', '095037.210000', '095041.320000', '095045.430000', '095049.540000', '095053.650000', '095057.760000', '095101.870000', '095105.980000', '095110.090000', '095114.200000', '095118.310000', '095122.420000', '095126.530000', '095130.640000', '095134.750000', '095138.860000', '095142.970000', '095147.080000', '095151.190000', '095155.300000', '095159.410000', 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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.1
bdiffsmean0.0294
bdiffsmedian0.019
bdiffsmin0.0007
efcshell010.4056
efcshell020.4333
efcshell030.4429
efcshell040.4743
efcshell050.5124
fadegenerate0.0
fanans0.0
fbershell014326.2563
fbershell021933.2539
fbershell03982.2083
fbershell04335.7891
fbershell05141.3521
fdmean2.7991
fdnum99
fdperc96.11650485436893
ndc0.95
sigmacc1493.7217
sigmapca245.6895
sigmapiesno42.5895
snrccshell03.7
snrccshell1best3.67
snrccshell1worst3.67
snrccshell2best2.66
snrccshell2worst1.77
snrccshell3best1.97
snrccshell3worst1.05
snrccshell4best1.35
snrccshell4worst0.58
spikesglobal70.76
spikesslicei209.76
spikesslicej127.57
spikesslicek209.53
summarybgk117.5079
summarybgmad59.3041
summarybgmean562.1923
summarybgmedian132.0
summarybgn1274294.0
summarybgp0569.0
summarybgp952601.0
summarybgstdv1599.6339
summaryfgk5.3948
summaryfgmad5255.8249
summaryfgmean11244.0433
summaryfgmedian9486.0
summaryfgn313306.0
summaryfgp052565.0
summaryfgp9525436.0
summaryfgstdv7397.9529
summarywmk22.0855
summarywmmad2751.7097
summarywmmean6937.3898
summarywmmedian6959.0
summarywmn91678.0
summarywmp051126.0
summarywmp9511752.0
summarywmstdv3435.0928
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