Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-background_bval-03000_dwi.svg

Reports for: bval 500.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-avgstd_bval-00500_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0001/figures/sub-0001_ses-01_acq-96dirX6b0Xmb_desc-background_bval-00500_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0001/ses-01/dwi/sub-0001_ses-01_acq-96dirX6b0Xmb_dwi.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume4bebd91d99693c68a35bddcba39721e

AcquisitionMatrixPE140
AcquisitionNumber1
AcquisitionTime14:18:36.107500
BandwidthPerPixelPhaseEncode10.352
BaseResolution140
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000689998
DeviceSerialNumber66112
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.0884
EchoTrainLength105
EffectiveEchoSpacing0.000689998
FlipAngle90
ImageCommentsUnaliased MB3/PE3 SENSE1
ImageOrientationPatientDICOM[0.999402, 0.0325789, 0.0115943, -0.0345506, 0.926794, 0.373979]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps105
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamedwi_acq-96dir-6b0-mb
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_diff
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE140
RepetitionTime4.11
SAR0.213833
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceNameep_b5#1
SequenceVariantSK\SS
SeriesDescriptiondwi_acq-96dir-6b0-mb
SeriesNumber8
ShimSetting[4166, -7777, -7262, 523, -56, -374, 50, 64]
SliceThickness1.7
SliceTiming[0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97, 0, 2.12, 0.1525, 2.2725, 0.3025, 2.4225, 0.455, 2.575, 0.605, 2.7275, 0.7575, 2.8775, 0.91, 3.03, 1.06, 3.18, 1.2125, 3.3325, 1.3625, 3.485, 1.515, 3.635, 1.665, 3.7875, 1.8175, 3.9375, 1.97]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.7
StationNameAWP66112
TotalReadoutTime0.0959097
TxRefAmp236.07
WipMemBlock00aebc2d-cd3c-4a9a-85ee-8fe6bafbda7e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja
dcmmetaaffine[[-1.7132604122161865, -0.059229541569948196, -0.002445083810016513, 123.38119506835938], [-0.05584948882460594, 1.5887889862060547, 0.636064350605011, -110.62329864501953], [0.01987592875957489, -0.641106128692627, 1.5765202045440674, -48.353729248046875], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 139.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[140, 140, 81, 103]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValuesLikely DSI
bValuesEstimation[500.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.0485
bdiffsmean0.0149
bdiffsmedian0.0141
bdiffsmin0.0006
efcshell010.3993
efcshell020.4175
efcshell030.43
efcshell040.4682
efcshell050.5117
fadegenerate0.0
fanans0.0
fbershell013781.4829
fbershell021677.8254
fbershell03843.0499
fbershell04277.4039
fbershell05112.686
fdmean2.6991
fdnum101
fdperc98.05825242718447
ndc0.7453
sigmacc987.4131
sigmapca235.531
sigmapiesno40.2785
snrccshell05.26
snrccshell1best5.17
snrccshell1worst5.17
snrccshell2best3.73
snrccshell2worst2.29
snrccshell3best2.95
snrccshell3worst1.15
snrccshell4best2.4
snrccshell4worst0.61
spikesglobal56.32
spikesslicei202.91
spikesslicej40.24
spikesslicek221.42
summarybgk241.8237
summarybgmad51.8911
summarybgmean492.4645
summarybgmedian124.0
summarybgn1316711.0
summarybgp0570.0
summarybgp952333.0
summarybgstdv1318.9314
summaryfgk6.6247
summaryfgmad4040.091
summaryfgmean9397.2627
summaryfgmedian8353.0
summaryfgn270889.0
summaryfgp051890.0
summaryfgp9519594.0
summaryfgstdv5561.7098
summarywmk24.8109
summarywmmad2640.5146
summarywmmean6816.5124
summarywmmedian6662.0
summarywmn99161.0
summarywmp05731.0
summarywmp9512759.0
summarywmstdv4117.2715
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