+ dssource=ria+file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore#2d58dd48-4166-4dc3-9cd1-64f3d0665a8c
+ pushgitremote=file:///data/project/QC_workflow/TMP/RIA_QCworkflow/2d5/8dd48-4166-4dc3-9cd1-64f3d0665a8c
+ subid=sub-0053
+ export 'DUCT_OUTPUT_PREFIX=logs/duct/sub-0053_{datetime_filesafe}-{pid}_'
+ DUCT_OUTPUT_PREFIX='logs/duct/sub-0053_{datetime_filesafe}-{pid}_'
+ datalad clone ria+file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore#2d58dd48-4166-4dc3-9cd1-64f3d0665a8c ds
[INFO] Attempting a clone into /var/lib/condor/execute/dir_3279211/ds 
[INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/2d5/8dd48-4166-4dc3-9cd1-64f3d0665a8c to /var/lib/condor/execute/dir_3279211/ds 
[INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3279211/ds) 
+ cd ds
+ git remote add outputstore file:///data/project/QC_workflow/TMP/RIA_QCworkflow/2d5/8dd48-4166-4dc3-9cd1-64f3d0665a8c
+ git checkout -b job_sub-0053_9220557
Switched to a new branch 'job_sub-0053_9220557'
+ datalad get -n sourcedata/raw/
[INFO] Attempting a clone into /var/lib/condor/execute/dir_3279211/ds/sourcedata/raw 
[INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/2ee/2bfa7-6c1b-4cf6-87e9-297e30f42517 to /var/lib/condor/execute/dir_3279211/ds/sourcedata/raw 
[INFO] Attempting to clone from https://github.com/OpenNeuroDatasets/ds005256.git to /var/lib/condor/execute/dir_3279211/ds/sourcedata/raw 
[INFO] Start enumerating objects 
[INFO] Start receiving objects 
[INFO] Start resolving deltas 
[INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3279211/ds/sourcedata/raw) 
[INFO] Remote origin not usable by git-annex; setting annex-ignore 
[INFO] https://github.com/OpenNeuroDatasets/ds005256.git/config download failed: Not Found 
[INFO] access to 1 dataset sibling openneuro not auto-enabled, enable with:
| 		datalad siblings -d "/var/lib/condor/execute/dir_3279211/ds/sourcedata/raw" enable -s openneuro 
+ datalad containers-run -m 'Compute MRIQC for sub-0053' -n bids-mriqc -i sourcedata/raw/sub-0053 -i sourcedata/raw/dataset_description.json mriqc sourcedata/raw . participant --participant-label sub-0053 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports
[INFO] Making sure inputs are available (this may take some time) 
[INFO] Attempting a clone into /var/lib/condor/execute/dir_3279211/ds/code/containers 
[INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/b02/e63c2-62c1-11e9-82b0-52540040489c to /var/lib/condor/execute/dir_3279211/ds/code/containers 
[INFO] Attempting to clone from https://github.com/ReproNim/containers.git to /var/lib/condor/execute/dir_3279211/ds/code/containers 
[INFO] Start enumerating objects 
[INFO] Start counting objects 
[INFO] Start compressing objects 
[INFO] Start receiving objects 
[INFO] Start resolving deltas 
[INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3279211/ds/code/containers) 
[INFO] Remote origin not usable by git-annex; setting annex-ignore 
[INFO] https://github.com/ReproNim/containers.git/config download failed: Not Found 
[INFO] == Command start (output follows) ===== 
2025-09-17T23:30:03+0200 [INFO    ] con-duct: duct 0.16.0 is executing 'singularity exec -W /tmp/singtmp.Zr650B -B /var/lib/condor/execute/dir_3279211/ds/code/containers/binds/zoneinfo/UTC:/etc/localtime -B /tmp/singtmp.Zr650B/tmp:/tmp -B /tmp/singtmp.Zr650B/var/tmp:/var/tmp -e -B /var/lib/condor/execute/dir_3279211/ds -H /var/lib/condor/execute/dir_3279211/ds/code/containers/binds/HOME --pwd /var/lib/condor/execute/dir_3279211/ds code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0053 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports'...
2025-09-17T23:30:03+0200 [INFO    ] con-duct: Log files will be written to logs/duct/sub-0053_2025.09.17T23.30.03-3376375_
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories

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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
  xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
2025-09-19T01:59:29+0200 [INFO    ] con-duct: Summary:
Exit Code: 0
Command: singularity exec -W /tmp/singtmp.Zr650B -B /var/lib/condor/execute/dir_3279211/ds/code/containers/binds/zoneinfo/UTC:/etc/localtime -B /tmp/singtmp.Zr650B/tmp:/tmp -B /tmp/singtmp.Zr650B/var/tmp:/var/tmp -e -B /var/lib/condor/execute/dir_3279211/ds -H /var/lib/condor/execute/dir_3279211/ds/code/containers/binds/HOME --pwd /var/lib/condor/execute/dir_3279211/ds code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0053 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports
Log files location: logs/duct/sub-0053_2025.09.17T23.30.03-3376375_
Wall Clock Time: 95366.145 sec
Memory Peak Usage (RSS): 13.9 GB
Memory Average Usage (RSS): 2.1 GB
Virtual Memory Peak Usage (VSZ): 19.3 GB
Virtual Memory Average Usage (VSZ): 4.8 GB
Memory Peak Percentage: 2.40%
Memory Average Percentage: 0.24%
CPU Peak Usage: 312.00%
Average CPU Usage: 90.45%

[INFO] == Command exit (modification check follows) ===== 
+ datalad push --to mriqc_out-storage
[INFO] Determine push target 
[INFO] Push refspecs 
[INFO] Transfer data 
[INFO] Finished push of Dataset(/var/lib/condor/execute/dir_3279211/ds) 
+ flock --verbose /data/project/QC_workflow/TMP/ds005256-mriqc/.condor_datalad_lock git push outputstore
To file:///data/project/QC_workflow/TMP/RIA_QCworkflow/2d5/8dd48-4166-4dc3-9cd1-64f3d0665a8c
 * [new branch]      job_sub-0053_9220557 -> job_sub-0053_9220557
+ echo SUCCESS