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ds004173-catqc/logs/10071002.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887183/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887183/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887183/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887183/ds/sub-772389/sub-772389_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-772389/sub-772389_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 10s
95s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 6s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
142s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
6s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 17s
ROI estimation of 'neuromorphometrics' atlas 68s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 120s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 99s
Write results 101s
744s
Quality check 16s
/var/lib/condor/execute/dir_1887183/ds/sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 6 second(s).
Image Quality Rating (IQR): 87.92% (B+)
GM volume (GMV): 47.91% (774.69 / 1616.97 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/mri
Reports are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/report
Labels are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/label
------------------------------------------------------------------------
22-Oct-2025 01:12:07 - Done 'CAT12: Segmentation'
22-Oct-2025 01:12:07 - Done
Bye for now...
get(ok): sourcedata/raw/sub-772389/anat/sub-772389_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887183/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887183/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.mat (file)
add(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.xml (file)
add(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/m0wp1sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/mwp1sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/p0sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/wp0sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.mat (file)
add(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.xml (file)
add(ok): sub-772389/report/catlog_sub-772389_acq-standard_T1w.txt (file)
add(ok): sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:50 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:50 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887183/ds/sub-772389/sub-772389_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-772389/sub-772389_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 46s
Update probability maps 9s
92s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 10s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
149s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 67s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 27s
ROI estimation of 'mori' atlas 39s
ROI estimation of 'anatomy3' atlas 55s
ROI estimation of 'julichbrain' atlas 72s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 78s
Write results 80s
600s
Quality check 16s
/var/lib/condor/execute/dir_1887183/ds/sub-772389/report/catreport_sub-772389_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 58 second(s).
Image Quality Rating (IQR): 82.00% (B-)
GM volume (GMV): 46.89% (753.81 / 1607.70 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/mri
Reports are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/report
Labels are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/label
------------------------------------------------------------------------
22-Oct-2025 01:42:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:42:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-772389/anat/sub-772389_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.mat (file)
unlock(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-772389/mri/m0wp1sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/mwp1sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/p0sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-772389/mri/wp0sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.mat (file)
unlock(ok): sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887183/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-772389/label/catROI_sub-772389_acq-headmotion2_T1w.mat (file)
add(ok): sub-772389/label/catROI_sub-772389_acq-headmotion2_T1w.xml (file)
add(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/m0wp1sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/mwp1sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/p0sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/wp0sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/report/cat_sub-772389_acq-headmotion2_T1w.mat (file)
add(ok): sub-772389/report/cat_sub-772389_acq-headmotion2_T1w.xml (file)
add(ok): sub-772389/report/catlog_sub-772389_acq-headmotion2_T1w.txt (file)
add(ok): sub-772389/report/catreport_sub-772389_acq-headmotion2_T1w.pdf (file)
add(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/m0wp1sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/mwp1sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/p0sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/wp0sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.mat (file)
add(ok): sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:43:37 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:43:37 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887183/ds/sub-772389/sub-772389_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-772389/sub-772389_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 46s
Update probability maps 10s
94s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 7s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 21s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
135s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
6s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 16s
ROI estimation of 'neuromorphometrics' atlas 60s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 41s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 55s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 68s
494s
Quality check 14s
/var/lib/condor/execute/dir_1887183/ds/sub-772389/report/catreport_sub-772389_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 20 second(s).
Image Quality Rating (IQR): 82.11% (B-)
GM volume (GMV): 46.48% (743.83 / 1600.17 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/mri
Reports are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/report
Labels are saved in /var/lib/condor/execute/dir_1887183/ds/sub-772389/label
------------------------------------------------------------------------
22-Oct-2025 02:10:59 - Done 'CAT12: Segmentation'
22-Oct-2025 02:10:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-772389/anat/sub-772389_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-772389/label/catROI_sub-772389_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.mat (file)
unlock(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-772389/mri/m0wp1sub-772389_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/m0wp1sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/mwp1sub-772389_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/mwp1sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/p0sub-772389_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/p0sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-772389/mri/wp0sub-772389_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-772389/mri/wp0sub-772389_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-772389/report/cat_sub-772389_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.mat (file)
unlock(ok): sub-772389/report/catreport_sub-772389_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887183/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-772389/label/catROI_sub-772389_acq-headmotion1_T1w.mat (file)
add(ok): sub-772389/label/catROI_sub-772389_acq-headmotion1_T1w.xml (file)
add(ok): sub-772389/mri/it_sub-772389_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/m0wp1sub-772389_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-772389/mri/mwp1sub-772389_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-772389/mri/p0sub-772389_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-772389/mri/t_sub-772389_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/wp0sub-772389_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-772389/report/cat_sub-772389_acq-headmotion1_T1w.mat (file)
add(ok): sub-772389/report/cat_sub-772389_acq-headmotion1_T1w.xml (file)
add(ok): sub-772389/report/catlog_sub-772389_acq-headmotion1_T1w.txt (file)
add(ok): sub-772389/report/catreport_sub-772389_acq-headmotion1_T1w.pdf (file)
add(ok): sub-772389/label/catROI_sub-772389_acq-headmotion2_T1w.mat (file)
add(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/m0wp1sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/m0wp1sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/mwp1sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/mwp1sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/p0sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/p0sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-772389/mri/wp0sub-772389_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-772389/mri/wp0sub-772389_acq-standard_T1w.nii.gz (file)
add(ok): sub-772389/report/cat_sub-772389_acq-headmotion2_T1w.mat (file)
add(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.mat (file)
add(ok): sub-772389/report/catreport_sub-772389_acq-headmotion2_T1w.pdf (file)
add(ok): sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-772389/label/catROI_sub-772389_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/label/catROI_sub-772389_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/label/catROI_sub-772389_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/it_sub-772389_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/it_sub-772389_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/it_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/it_sub-772389_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/m0wp1sub-772389_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/m0wp1sub-772389_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/m0wp1sub-772389_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/mwp1sub-772389_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/mwp1sub-772389_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/mwp1sub-772389_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/p0sub-772389_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/p0sub-772389_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/p0sub-772389_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/t_sub-772389_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/t_sub-772389_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/t_sub-772389_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/t_sub-772389_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/wp0sub-772389_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/wp0sub-772389_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/mri/wp0sub-772389_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-772389/report/cat_sub-772389_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/report/cat_sub-772389_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/report/cat_sub-772389_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-772389/report/catreport_sub-772389_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-772389/report/catreport_sub-772389_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-772389/report/catreport_sub-772389_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001318 seconds
flock: executing git
SUCCESS
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