install(ok): /var/lib/condor/execute/dir_1300218/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300218/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300218/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:19 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:19 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300218/ds/sub-691641/sub-691641_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-691641/sub-691641_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
37s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
8s
Use initial fine affine registration. 62s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
77s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 20s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
84s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 12s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 48s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
95s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
5s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 25s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 25s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s
Write results 63s
281s
Quality check 11s
/var/lib/condor/execute/dir_1300218/ds/sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 19 minute(s) and 11 second(s).
Image Quality Rating (IQR): 88.10% (B+)
GM volume (GMV): 46.49% (576.05 / 1239.19 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/mri
Reports are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/report
Labels are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/label
------------------------------------------------------------------------
22-Oct-2025 00:58:32 - Done 'CAT12: Segmentation'
22-Oct-2025 00:58:32 - Done
Bye for now...
get(ok): sourcedata/raw/sub-691641/anat/sub-691641_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300218/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300218/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.mat (file)
add(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.xml (file)
add(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/m0wp1sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/mwp1sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/p0sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/wp0sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.mat (file)
add(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.xml (file)
add(ok): sub-691641/report/catlog_sub-691641_acq-standard_T1w.txt (file)
add(ok): sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:59:10 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:59:10 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300218/ds/sub-691641/sub-691641_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-691641/sub-691641_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 5s
Affine registration 6s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
70s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 37s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 13s
Fast Optimized Shooting registration 9s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.03) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 20s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
83s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 10s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 54s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
97s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 18s
ROI estimation of 'julichbrain' atlas 24s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 60s
Write results 61s
279s
Quality check 11s
/var/lib/condor/execute/dir_1300218/ds/sub-691641/report/catreport_sub-691641_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 19 minute(s) and 10 second(s).
Image Quality Rating (IQR): 87.26% (B+)
GM volume (GMV): 44.99% (544.77 / 1210.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/mri
Reports are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/report
Labels are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/label
------------------------------------------------------------------------
22-Oct-2025 01:18:22 - Done 'CAT12: Segmentation'
22-Oct-2025 01:18:22 - Done
Bye for now...
get(ok): sourcedata/raw/sub-691641/anat/sub-691641_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.mat (file)
unlock(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691641/mri/m0wp1sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/mwp1sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/p0sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691641/mri/wp0sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.mat (file)
unlock(ok): sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300218/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-691641/label/catROI_sub-691641_acq-headmotion2_T1w.mat (file)
add(ok): sub-691641/label/catROI_sub-691641_acq-headmotion2_T1w.xml (file)
add(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/m0wp1sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/mwp1sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/p0sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/wp0sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/report/cat_sub-691641_acq-headmotion2_T1w.mat (file)
add(ok): sub-691641/report/cat_sub-691641_acq-headmotion2_T1w.xml (file)
add(ok): sub-691641/report/catlog_sub-691641_acq-headmotion2_T1w.txt (file)
add(ok): sub-691641/report/catreport_sub-691641_acq-headmotion2_T1w.pdf (file)
add(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/m0wp1sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/mwp1sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/p0sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/wp0sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.mat (file)
add(ok): sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:19:01 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:19:01 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300218/ds/sub-691641/sub-691641_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-691641/sub-691641_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 5s
Affine registration 6s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
8s
Use initial fine affine registration. 64s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 9s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 20s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
83s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 11s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 54s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
99s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 25s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 18s
ROI estimation of 'julichbrain' atlas 24s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 61s
Write results 62s
277s
Quality check 11s
/var/lib/condor/execute/dir_1300218/ds/sub-691641/report/catreport_sub-691641_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 19 minute(s) and 9 second(s).
Image Quality Rating (IQR): 87.40% (B+)
GM volume (GMV): 45.21% (553.62 / 1224.60 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/mri
Reports are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/report
Labels are saved in /var/lib/condor/execute/dir_1300218/ds/sub-691641/label
------------------------------------------------------------------------
22-Oct-2025 01:38:12 - Done 'CAT12: Segmentation'
22-Oct-2025 01:38:12 - Done
Bye for now...
get(ok): sourcedata/raw/sub-691641/anat/sub-691641_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-691641/label/catROI_sub-691641_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.mat (file)
unlock(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691641/mri/m0wp1sub-691641_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/m0wp1sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/mwp1sub-691641_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/mwp1sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/p0sub-691641_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/p0sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691641/mri/wp0sub-691641_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-691641/mri/wp0sub-691641_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691641/report/cat_sub-691641_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.mat (file)
unlock(ok): sub-691641/report/catreport_sub-691641_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300218/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-691641/label/catROI_sub-691641_acq-headmotion1_T1w.mat (file)
add(ok): sub-691641/label/catROI_sub-691641_acq-headmotion1_T1w.xml (file)
add(ok): sub-691641/mri/it_sub-691641_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/m0wp1sub-691641_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691641/mri/mwp1sub-691641_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691641/mri/p0sub-691641_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691641/mri/t_sub-691641_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/wp0sub-691641_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691641/report/cat_sub-691641_acq-headmotion1_T1w.mat (file)
add(ok): sub-691641/report/cat_sub-691641_acq-headmotion1_T1w.xml (file)
add(ok): sub-691641/report/catlog_sub-691641_acq-headmotion1_T1w.txt (file)
add(ok): sub-691641/report/catreport_sub-691641_acq-headmotion1_T1w.pdf (file)
add(ok): sub-691641/label/catROI_sub-691641_acq-headmotion2_T1w.mat (file)
add(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/m0wp1sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/m0wp1sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/mwp1sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/mwp1sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/p0sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/p0sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691641/mri/wp0sub-691641_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691641/mri/wp0sub-691641_acq-standard_T1w.nii.gz (file)
add(ok): sub-691641/report/cat_sub-691641_acq-headmotion2_T1w.mat (file)
add(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.mat (file)
add(ok): sub-691641/report/catreport_sub-691641_acq-headmotion2_T1w.pdf (file)
add(ok): sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-691641/label/catROI_sub-691641_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/label/catROI_sub-691641_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/label/catROI_sub-691641_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/it_sub-691641_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/it_sub-691641_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/it_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/it_sub-691641_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/m0wp1sub-691641_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/m0wp1sub-691641_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/m0wp1sub-691641_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/mwp1sub-691641_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/mwp1sub-691641_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/mwp1sub-691641_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/p0sub-691641_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/p0sub-691641_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/p0sub-691641_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/t_sub-691641_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/t_sub-691641_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/t_sub-691641_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/t_sub-691641_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/wp0sub-691641_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/wp0sub-691641_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/mri/wp0sub-691641_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691641/report/cat_sub-691641_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/report/cat_sub-691641_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/report/cat_sub-691641_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691641/report/catreport_sub-691641_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-691641/report/catreport_sub-691641_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-691641/report/catreport_sub-691641_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 31.508465 seconds
flock: executing git
SUCCESS