install(ok): /var/lib/condor/execute/dir_1300205/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300205/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300205/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300205/ds/sub-809320/sub-809320_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-809320/sub-809320_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
78s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.14) 50s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
102s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 142s
Write results 145s
560s
Quality check 14s
/var/lib/condor/execute/dir_1300205/ds/sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 54 second(s).
Image Quality Rating (IQR): 85.57% (B)
GM volume (GMV): 44.94% (616.16 / 1370.95 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/mri
Reports are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/report
Labels are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/label
------------------------------------------------------------------------
22-Oct-2025 01:04:20 - Done 'CAT12: Segmentation'
22-Oct-2025 01:04:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-809320/anat/sub-809320_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300205/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300205/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.mat (file)
add(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.xml (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/p0sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/wp0sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.mat (file)
add(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.xml (file)
add(ok): sub-809320/report/catlog_sub-809320_acq-headmotion1_T1w.txt (file)
add(ok): sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:11 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:12 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300205/ds/sub-809320/sub-809320_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-809320/sub-809320_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 4s
Final scaling 6s
39s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
72s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 7s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
110s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 19s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 37s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s
Write results 142s
500s
Quality check 14s
/var/lib/condor/execute/dir_1300205/ds/sub-809320/report/catreport_sub-809320_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 50 second(s).
Image Quality Rating (IQR): 87.78% (B+)
GM volume (GMV): 46.79% (645.62 / 1379.93 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/mri
Reports are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/report
Labels are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/label
------------------------------------------------------------------------
22-Oct-2025 01:29:05 - Done 'CAT12: Segmentation'
22-Oct-2025 01:29:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-809320/anat/sub-809320_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/p0sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-809320/mri/wp0sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300205/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-809320/label/catROI_sub-809320_acq-standard_T1w.mat (file)
add(ok): sub-809320/label/catROI_sub-809320_acq-standard_T1w.xml (file)
add(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/m0wp1sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/mri/mwp1sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/mri/p0sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/wp0sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/report/cat_sub-809320_acq-standard_T1w.mat (file)
add(ok): sub-809320/report/cat_sub-809320_acq-standard_T1w.xml (file)
add(ok): sub-809320/report/catlog_sub-809320_acq-standard_T1w.txt (file)
add(ok): sub-809320/report/catreport_sub-809320_acq-standard_T1w.pdf (file)
add(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/p0sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/wp0sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.mat (file)
add(ok): sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:00 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:01 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300205/ds/sub-809320/sub-809320_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-809320/sub-809320_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 4s
Final scaling 5s
40s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
67s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 6s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.07) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 58s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
108s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 116s
Write results 118s
380s
Quality check 13s
/var/lib/condor/execute/dir_1300205/ds/sub-809320/report/catreport_sub-809320_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 53 second(s).
Image Quality Rating (IQR): 85.35% (B)
GM volume (GMV): 45.61% (617.66 / 1354.15 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/mri
Reports are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/report
Labels are saved in /var/lib/condor/execute/dir_1300205/ds/sub-809320/label
------------------------------------------------------------------------
22-Oct-2025 01:51:57 - Done 'CAT12: Segmentation'
22-Oct-2025 01:51:57 - Done
Bye for now...
get(ok): sourcedata/raw/sub-809320/anat/sub-809320_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-809320/label/catROI_sub-809320_acq-standard_T1w.mat (file)
unlock(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/m0wp1sub-809320_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/mwp1sub-809320_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/p0sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/p0sub-809320_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-809320/mri/wp0sub-809320_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-809320/mri/wp0sub-809320_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-809320/report/cat_sub-809320_acq-standard_T1w.mat (file)
unlock(ok): sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-809320/report/catreport_sub-809320_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300205/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-809320/label/catROI_sub-809320_acq-headmotion2_T1w.mat (file)
add(ok): sub-809320/label/catROI_sub-809320_acq-headmotion2_T1w.xml (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-809320/mri/p0sub-809320_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/wp0sub-809320_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-809320/report/cat_sub-809320_acq-headmotion2_T1w.mat (file)
add(ok): sub-809320/report/cat_sub-809320_acq-headmotion2_T1w.xml (file)
add(ok): sub-809320/report/catlog_sub-809320_acq-headmotion2_T1w.txt (file)
add(ok): sub-809320/report/catreport_sub-809320_acq-headmotion2_T1w.pdf (file)
add(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.mat (file)
add(ok): sub-809320/label/catROI_sub-809320_acq-standard_T1w.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/m0wp1sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/mwp1sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/mri/p0sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/p0sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-809320/mri/wp0sub-809320_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-809320/mri/wp0sub-809320_acq-standard_T1w.nii.gz (file)
add(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.mat (file)
add(ok): sub-809320/report/cat_sub-809320_acq-standard_T1w.mat (file)
add(ok): sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf (file)
add(ok): sub-809320/report/catreport_sub-809320_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-809320/label/catROI_sub-809320_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/label/catROI_sub-809320_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/label/catROI_sub-809320_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/it_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/it_sub-809320_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/it_sub-809320_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/it_sub-809320_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/m0wp1sub-809320_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/m0wp1sub-809320_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/mwp1sub-809320_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/mwp1sub-809320_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/p0sub-809320_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/p0sub-809320_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/p0sub-809320_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/t_sub-809320_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/t_sub-809320_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/t_sub-809320_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/t_sub-809320_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/wp0sub-809320_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/wp0sub-809320_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/mri/wp0sub-809320_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-809320/report/cat_sub-809320_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/report/cat_sub-809320_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/report/cat_sub-809320_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-809320/report/catreport_sub-809320_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-809320/report/catreport_sub-809320_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-809320/report/catreport_sub-809320_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000866 seconds
flock: executing git
SUCCESS