install(ok): /var/lib/condor/execute/dir_1300195/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300195/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300195/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300195/ds/sub-275211/sub-275211_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-275211/sub-275211_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 7s
42s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
86s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 3s
92s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 72s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
132s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 50s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 84s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s
Write results 89s
553s
Quality check 14s
/var/lib/condor/execute/dir_1300195/ds/sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 16 second(s).
Image Quality Rating (IQR): 88.01% (B+)
GM volume (GMV): 43.86% (703.25 / 1603.55 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/mri
Reports are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/report
Labels are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/label
------------------------------------------------------------------------
22-Oct-2025 01:05:42 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:42 - Done
Bye for now...
get(ok): sourcedata/raw/sub-275211/anat/sub-275211_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300195/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300195/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.mat (file)
add(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.xml (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/p0sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/wp0sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.mat (file)
add(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.xml (file)
add(ok): sub-275211/report/catlog_sub-275211_acq-headmotion1_T1w.txt (file)
add(ok): sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300195/ds/sub-275211/sub-275211_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-275211/sub-275211_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 4s
92s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
135s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.04]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
9s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 48s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 38s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 57s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 69s
Write results 71s
488s
Quality check 14s
/var/lib/condor/execute/dir_1300195/ds/sub-275211/report/catreport_sub-275211_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 15 second(s).
Image Quality Rating (IQR): 87.76% (B+)
GM volume (GMV): 45.14% (733.47 / 1624.79 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/mri
Reports are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/report
Labels are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/label
------------------------------------------------------------------------
22-Oct-2025 01:31:38 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:38 - Done
Bye for now...
get(ok): sourcedata/raw/sub-275211/anat/sub-275211_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/p0sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-275211/mri/wp0sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300195/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-275211/label/catROI_sub-275211_acq-standard_T1w.mat (file)
add(ok): sub-275211/label/catROI_sub-275211_acq-standard_T1w.xml (file)
add(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/m0wp1sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/mri/mwp1sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/mri/p0sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/wp0sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/report/cat_sub-275211_acq-standard_T1w.mat (file)
add(ok): sub-275211/report/cat_sub-275211_acq-standard_T1w.xml (file)
add(ok): sub-275211/report/catlog_sub-275211_acq-standard_T1w.txt (file)
add(ok): sub-275211/report/catreport_sub-275211_acq-standard_T1w.pdf (file)
add(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/p0sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/wp0sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.mat (file)
add(ok): sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300195/ds/sub-275211/sub-275211_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-275211/sub-275211_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 7s
42s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 9s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.07) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 77s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
138s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
4s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 44s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 65s
Write results 66s
355s
Quality check 14s
/var/lib/condor/execute/dir_1300195/ds/sub-275211/report/catreport_sub-275211_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 22 second(s).
Image Quality Rating (IQR): 87.55% (B+)
GM volume (GMV): 42.68% (691.49 / 1620.34 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/mri
Reports are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/report
Labels are saved in /var/lib/condor/execute/dir_1300195/ds/sub-275211/label
------------------------------------------------------------------------
22-Oct-2025 01:55:48 - Done 'CAT12: Segmentation'
22-Oct-2025 01:55:48 - Done
Bye for now...
get(ok): sourcedata/raw/sub-275211/anat/sub-275211_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-275211/label/catROI_sub-275211_acq-standard_T1w.mat (file)
unlock(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/m0wp1sub-275211_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/mwp1sub-275211_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/p0sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/p0sub-275211_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-275211/mri/wp0sub-275211_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-275211/mri/wp0sub-275211_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-275211/report/cat_sub-275211_acq-standard_T1w.mat (file)
unlock(ok): sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-275211/report/catreport_sub-275211_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300195/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-275211/label/catROI_sub-275211_acq-headmotion2_T1w.mat (file)
add(ok): sub-275211/label/catROI_sub-275211_acq-headmotion2_T1w.xml (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-275211/mri/p0sub-275211_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/wp0sub-275211_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-275211/report/cat_sub-275211_acq-headmotion2_T1w.mat (file)
add(ok): sub-275211/report/cat_sub-275211_acq-headmotion2_T1w.xml (file)
add(ok): sub-275211/report/catlog_sub-275211_acq-headmotion2_T1w.txt (file)
add(ok): sub-275211/report/catreport_sub-275211_acq-headmotion2_T1w.pdf (file)
add(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.mat (file)
add(ok): sub-275211/label/catROI_sub-275211_acq-standard_T1w.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/m0wp1sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/mwp1sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/mri/p0sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/p0sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-275211/mri/wp0sub-275211_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-275211/mri/wp0sub-275211_acq-standard_T1w.nii.gz (file)
add(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.mat (file)
add(ok): sub-275211/report/cat_sub-275211_acq-standard_T1w.mat (file)
add(ok): sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf (file)
add(ok): sub-275211/report/catreport_sub-275211_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-275211/label/catROI_sub-275211_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/label/catROI_sub-275211_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/label/catROI_sub-275211_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/it_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/it_sub-275211_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/it_sub-275211_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/it_sub-275211_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/m0wp1sub-275211_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/m0wp1sub-275211_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/mwp1sub-275211_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/mwp1sub-275211_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/p0sub-275211_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/p0sub-275211_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/p0sub-275211_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/t_sub-275211_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/t_sub-275211_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/t_sub-275211_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/t_sub-275211_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/wp0sub-275211_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/wp0sub-275211_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/mri/wp0sub-275211_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-275211/report/cat_sub-275211_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/report/cat_sub-275211_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/report/cat_sub-275211_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-275211/report/catreport_sub-275211_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-275211/report/catreport_sub-275211_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-275211/report/catreport_sub-275211_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000925 seconds
flock: executing git
SUCCESS