install(ok): /var/lib/condor/execute/dir_1300154/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300154/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300154/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:22 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300154/ds/sub-927452/sub-927452_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-927452/sub-927452_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 6s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
92s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 18s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 67s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
125s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 27s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 80s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 110s
Write results 112s
524s
Quality check 15s
/var/lib/condor/execute/dir_1300154/ds/sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 30 second(s).
Image Quality Rating (IQR): 87.88% (B+)
GM volume (GMV): 50.24% (725.38 / 1443.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/mri
Reports are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/report
Labels are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/label
------------------------------------------------------------------------
22-Oct-2025 01:04:54 - Done 'CAT12: Segmentation'
22-Oct-2025 01:04:54 - Done
Bye for now...
get(ok): sourcedata/raw/sub-927452/anat/sub-927452_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300154/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300154/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.mat (file)
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.xml (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/p0sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/wp0sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.mat (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.xml (file)
add(ok): sub-927452/report/catlog_sub-927452_acq-headmotion2_T1w.txt (file)
add(ok): sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:39 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:39 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300154/ds/sub-927452/sub-927452_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-927452/sub-927452_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
70s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
92s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
119s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 39s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 45s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 75s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 101s
Write results 103s
466s
Quality check 14s
/var/lib/condor/execute/dir_1300154/ds/sub-927452/report/catreport_sub-927452_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 14 second(s).
Image Quality Rating (IQR): 87.78% (B+)
GM volume (GMV): 50.26% (726.35 / 1445.15 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/mri
Reports are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/report
Labels are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/label
------------------------------------------------------------------------
22-Oct-2025 01:29:56 - Done 'CAT12: Segmentation'
22-Oct-2025 01:29:56 - Done
Bye for now...
get(ok): sourcedata/raw/sub-927452/anat/sub-927452_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/p0sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-927452/mri/wp0sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300154/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion1_T1w.mat (file)
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion1_T1w.xml (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/p0sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/wp0sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion1_T1w.mat (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion1_T1w.xml (file)
add(ok): sub-927452/report/catlog_sub-927452_acq-headmotion1_T1w.txt (file)
add(ok): sub-927452/report/catreport_sub-927452_acq-headmotion1_T1w.pdf (file)
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/p0sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/wp0sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.mat (file)
add(ok): sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:44 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:44 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300154/ds/sub-927452/sub-927452_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-927452/sub-927452_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
68s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 7s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
112s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 76s
Write results 78s
323s
Quality check 13s
/var/lib/condor/execute/dir_1300154/ds/sub-927452/report/catreport_sub-927452_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 17 second(s).
Image Quality Rating (IQR): 87.98% (B+)
GM volume (GMV): 50.62% (732.56 / 1447.07 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/mri
Reports are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/report
Labels are saved in /var/lib/condor/execute/dir_1300154/ds/sub-927452/label
------------------------------------------------------------------------
22-Oct-2025 01:52:03 - Done 'CAT12: Segmentation'
22-Oct-2025 01:52:03 - Done
Bye for now...
get(ok): sourcedata/raw/sub-927452/anat/sub-927452_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-927452/label/catROI_sub-927452_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/p0sub-927452_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/p0sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-927452/mri/wp0sub-927452_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-927452/mri/wp0sub-927452_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-927452/report/cat_sub-927452_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-927452/report/catreport_sub-927452_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300154/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-927452/label/catROI_sub-927452_acq-standard_T1w.mat (file)
add(ok): sub-927452/label/catROI_sub-927452_acq-standard_T1w.xml (file)
add(ok): sub-927452/mri/it_sub-927452_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/m0wp1sub-927452_acq-standard_T1w.nii.gz (file)
add(ok): sub-927452/mri/mwp1sub-927452_acq-standard_T1w.nii.gz (file)
add(ok): sub-927452/mri/p0sub-927452_acq-standard_T1w.nii.gz (file)
add(ok): sub-927452/mri/t_sub-927452_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/wp0sub-927452_acq-standard_T1w.nii.gz (file)
add(ok): sub-927452/report/cat_sub-927452_acq-standard_T1w.mat (file)
add(ok): sub-927452/report/cat_sub-927452_acq-standard_T1w.xml (file)
add(ok): sub-927452/report/catlog_sub-927452_acq-standard_T1w.txt (file)
add(ok): sub-927452/report/catreport_sub-927452_acq-standard_T1w.pdf (file)
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion1_T1w.mat (file)
add(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/p0sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/p0sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-927452/mri/wp0sub-927452_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-927452/mri/wp0sub-927452_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion1_T1w.mat (file)
add(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.mat (file)
add(ok): sub-927452/report/catreport_sub-927452_acq-headmotion1_T1w.pdf (file)
add(ok): sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-927452/label/catROI_sub-927452_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/label/catROI_sub-927452_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/label/catROI_sub-927452_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/it_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/it_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/it_sub-927452_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/it_sub-927452_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/m0wp1sub-927452_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/m0wp1sub-927452_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/mwp1sub-927452_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/mwp1sub-927452_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/p0sub-927452_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/p0sub-927452_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/p0sub-927452_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/t_sub-927452_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/t_sub-927452_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/t_sub-927452_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/t_sub-927452_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/wp0sub-927452_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/wp0sub-927452_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/mri/wp0sub-927452_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-927452/report/cat_sub-927452_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/report/cat_sub-927452_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/report/cat_sub-927452_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-927452/report/catreport_sub-927452_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-927452/report/catreport_sub-927452_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-927452/report/catreport_sub-927452_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001215 seconds
flock: executing git
SUCCESS