install(ok): /var/lib/condor/execute/dir_1300104/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300104/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300104/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:49 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:49 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300104/ds/sub-714347/sub-714347_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-714347/sub-714347_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 6s
Final scaling 7s
43s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 43s
Update probability maps 8s
86s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 3s
92s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
101s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
144s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 50s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 27s
ROI estimation of 'anatomy3' atlas 38s
ROI estimation of 'julichbrain' atlas 44s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 88s
Write results 90s
492s
Quality check 15s
/var/lib/condor/execute/dir_1300104/ds/sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 3 second(s).
Image Quality Rating (IQR): 87.59% (B+)
GM volume (GMV): 47.17% (838.36 / 1777.21 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/mri
Reports are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/report
Labels are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/label
------------------------------------------------------------------------
22-Oct-2025 01:05:54 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:54 - Done
Bye for now...
get(ok): sourcedata/raw/sub-714347/anat/sub-714347_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300104/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300104/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.mat (file)
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.xml (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/p0sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/wp0sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.mat (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.xml (file)
add(ok): sub-714347/report/catlog_sub-714347_acq-headmotion1_T1w.txt (file)
add(ok): sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:33 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:33 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300104/ds/sub-714347/sub-714347_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-714347/sub-714347_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 7s
42s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
85s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 6s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 70s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
134s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 39s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 34s
ROI estimation of 'julichbrain' atlas 42s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 30s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 57s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 68s
411s
Quality check 15s
/var/lib/condor/execute/dir_1300104/ds/sub-714347/report/catreport_sub-714347_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 4 second(s).
Image Quality Rating (IQR): 86.68% (B+)
GM volume (GMV): 47.13% (837.49 / 1776.94 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/mri
Reports are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/report
Labels are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/label
------------------------------------------------------------------------
22-Oct-2025 01:31:39 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:39 - Done
Bye for now...
get(ok): sourcedata/raw/sub-714347/anat/sub-714347_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/p0sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-714347/mri/wp0sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300104/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion2_T1w.mat (file)
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion2_T1w.xml (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/mri/p0sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/wp0sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion2_T1w.mat (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion2_T1w.xml (file)
add(ok): sub-714347/report/catlog_sub-714347_acq-headmotion2_T1w.txt (file)
add(ok): sub-714347/report/catreport_sub-714347_acq-headmotion2_T1w.pdf (file)
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/p0sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/wp0sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.mat (file)
add(ok): sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300104/ds/sub-714347/sub-714347_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-714347/sub-714347_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
72s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 16s
Update Skull-Stripping 43s
Update probability maps 8s
85s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 8s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
102s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 81s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
146s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 63s
Write results 65s
314s
Quality check 15s
/var/lib/condor/execute/dir_1300104/ds/sub-714347/report/catreport_sub-714347_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 29 second(s).
Image Quality Rating (IQR): 87.71% (B+)
GM volume (GMV): 48.37% (864.19 / 1786.73 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/mri
Reports are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/report
Labels are saved in /var/lib/condor/execute/dir_1300104/ds/sub-714347/label
------------------------------------------------------------------------
22-Oct-2025 01:54:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:54:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-714347/anat/sub-714347_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-714347/label/catROI_sub-714347_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/p0sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/p0sub-714347_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-714347/mri/wp0sub-714347_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-714347/mri/wp0sub-714347_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-714347/report/cat_sub-714347_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-714347/report/catreport_sub-714347_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300104/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-714347/label/catROI_sub-714347_acq-standard_T1w.mat (file)
add(ok): sub-714347/label/catROI_sub-714347_acq-standard_T1w.xml (file)
add(ok): sub-714347/mri/it_sub-714347_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/m0wp1sub-714347_acq-standard_T1w.nii.gz (file)
add(ok): sub-714347/mri/mwp1sub-714347_acq-standard_T1w.nii.gz (file)
add(ok): sub-714347/mri/p0sub-714347_acq-standard_T1w.nii.gz (file)
add(ok): sub-714347/mri/t_sub-714347_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/wp0sub-714347_acq-standard_T1w.nii.gz (file)
add(ok): sub-714347/report/cat_sub-714347_acq-standard_T1w.mat (file)
add(ok): sub-714347/report/cat_sub-714347_acq-standard_T1w.xml (file)
add(ok): sub-714347/report/catlog_sub-714347_acq-standard_T1w.txt (file)
add(ok): sub-714347/report/catreport_sub-714347_acq-standard_T1w.pdf (file)
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.mat (file)
add(ok): sub-714347/label/catROI_sub-714347_acq-headmotion2_T1w.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/mri/p0sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/p0sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-714347/mri/wp0sub-714347_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-714347/mri/wp0sub-714347_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.mat (file)
add(ok): sub-714347/report/cat_sub-714347_acq-headmotion2_T1w.mat (file)
add(ok): sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf (file)
add(ok): sub-714347/report/catreport_sub-714347_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-714347/label/catROI_sub-714347_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/label/catROI_sub-714347_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/label/catROI_sub-714347_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/it_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/it_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/it_sub-714347_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/it_sub-714347_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/m0wp1sub-714347_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/m0wp1sub-714347_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/mwp1sub-714347_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/mwp1sub-714347_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/p0sub-714347_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/p0sub-714347_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/p0sub-714347_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/t_sub-714347_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/t_sub-714347_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/t_sub-714347_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/t_sub-714347_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/wp0sub-714347_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/wp0sub-714347_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/mri/wp0sub-714347_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-714347/report/cat_sub-714347_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/report/cat_sub-714347_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/report/cat_sub-714347_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-714347/report/catreport_sub-714347_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-714347/report/catreport_sub-714347_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-714347/report/catreport_sub-714347_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001195 seconds
flock: executing git
SUCCESS