install(ok): /var/lib/condor/execute/dir_3197524/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197524/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197524/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197524/ds/sub-599619/sub-599619_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-599619/sub-599619_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
99s
Global intensity correction 19s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 10s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 23s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
147s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 61s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 135s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 179s
Write results 182s
817s
Quality check 17s
/var/lib/condor/execute/dir_3197524/ds/sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 9 second(s).
Image Quality Rating (IQR): 87.85% (B+)
GM volume (GMV): 46.45% (671.53 / 1445.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/mri
Reports are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/report
Labels are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/label
------------------------------------------------------------------------
22-Oct-2025 01:13:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:13:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-599619/anat/sub-599619_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197524/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197524/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.mat (file)
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.xml (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/p0sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/wp0sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.mat (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.xml (file)
add(ok): sub-599619/report/catlog_sub-599619_acq-headmotion1_T1w.txt (file)
add(ok): sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197524/ds/sub-599619/sub-599619_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-599619/sub-599619_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 10s
118s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 81s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
144s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 50s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 127s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 148s
Write results 150s
772s
Quality check 16s
/var/lib/condor/execute/dir_3197524/ds/sub-599619/report/catreport_sub-599619_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 11 second(s).
Image Quality Rating (IQR): 87.78% (B+)
GM volume (GMV): 46.23% (668.74 / 1446.59 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/mri
Reports are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/report
Labels are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/label
------------------------------------------------------------------------
22-Oct-2025 01:45:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:45:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-599619/anat/sub-599619_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/p0sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-599619/mri/wp0sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197524/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion2_T1w.mat (file)
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion2_T1w.xml (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/mri/p0sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/wp0sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion2_T1w.mat (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion2_T1w.xml (file)
add(ok): sub-599619/report/catlog_sub-599619_acq-headmotion2_T1w.txt (file)
add(ok): sub-599619/report/catreport_sub-599619_acq-headmotion2_T1w.pdf (file)
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/p0sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/wp0sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.mat (file)
add(ok): sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:46:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:46:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197524/ds/sub-599619/sub-599619_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-599619/sub-599619_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
44s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 9s
94s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 8s
112s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 77s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
142s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 31s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 40s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 92s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 97s
Write results 98s
543s
Quality check 13s
/var/lib/condor/execute/dir_3197524/ds/sub-599619/report/catreport_sub-599619_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 48 second(s).
Image Quality Rating (IQR): 87.84% (B+)
GM volume (GMV): 46.38% (672.32 / 1449.72 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/mri
Reports are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/report
Labels are saved in /var/lib/condor/execute/dir_3197524/ds/sub-599619/label
------------------------------------------------------------------------
22-Oct-2025 02:12:58 - Done 'CAT12: Segmentation'
22-Oct-2025 02:12:58 - Done
Bye for now...
get(ok): sourcedata/raw/sub-599619/anat/sub-599619_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-599619/label/catROI_sub-599619_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/p0sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/p0sub-599619_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-599619/mri/wp0sub-599619_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-599619/mri/wp0sub-599619_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-599619/report/cat_sub-599619_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-599619/report/catreport_sub-599619_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197524/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-599619/label/catROI_sub-599619_acq-standard_T1w.mat (file)
add(ok): sub-599619/label/catROI_sub-599619_acq-standard_T1w.xml (file)
add(ok): sub-599619/mri/it_sub-599619_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/m0wp1sub-599619_acq-standard_T1w.nii.gz (file)
add(ok): sub-599619/mri/mwp1sub-599619_acq-standard_T1w.nii.gz (file)
add(ok): sub-599619/mri/p0sub-599619_acq-standard_T1w.nii.gz (file)
add(ok): sub-599619/mri/t_sub-599619_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/wp0sub-599619_acq-standard_T1w.nii.gz (file)
add(ok): sub-599619/report/cat_sub-599619_acq-standard_T1w.mat (file)
add(ok): sub-599619/report/cat_sub-599619_acq-standard_T1w.xml (file)
add(ok): sub-599619/report/catlog_sub-599619_acq-standard_T1w.txt (file)
add(ok): sub-599619/report/catreport_sub-599619_acq-standard_T1w.pdf (file)
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.mat (file)
add(ok): sub-599619/label/catROI_sub-599619_acq-headmotion2_T1w.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/mri/p0sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/p0sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-599619/mri/wp0sub-599619_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-599619/mri/wp0sub-599619_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.mat (file)
add(ok): sub-599619/report/cat_sub-599619_acq-headmotion2_T1w.mat (file)
add(ok): sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf (file)
add(ok): sub-599619/report/catreport_sub-599619_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-599619/label/catROI_sub-599619_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/label/catROI_sub-599619_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/label/catROI_sub-599619_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/it_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/it_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/it_sub-599619_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/it_sub-599619_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/m0wp1sub-599619_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/m0wp1sub-599619_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/mwp1sub-599619_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/mwp1sub-599619_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/p0sub-599619_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/p0sub-599619_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/p0sub-599619_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/t_sub-599619_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/t_sub-599619_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/t_sub-599619_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/t_sub-599619_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/wp0sub-599619_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/wp0sub-599619_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/mri/wp0sub-599619_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-599619/report/cat_sub-599619_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/report/cat_sub-599619_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/report/cat_sub-599619_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-599619/report/catreport_sub-599619_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-599619/report/catreport_sub-599619_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-599619/report/catreport_sub-599619_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000737 seconds
flock: executing git
SUCCESS