install(ok): /var/lib/condor/execute/dir_3197507/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197507/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197507/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197507/ds/sub-125171/sub-125171_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-125171/sub-125171_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
50s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
100s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.17) 64s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
128s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 53s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 40s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 135s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 171s
Write results 174s
771s
Quality check 18s
/var/lib/condor/execute/dir_3197507/ds/sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 35 second(s).
Image Quality Rating (IQR): 85.37% (B)
GM volume (GMV): 45.47% (674.51 / 1483.36 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/mri
Reports are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/report
Labels are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/label
------------------------------------------------------------------------
22-Oct-2025 01:13:45 - Done 'CAT12: Segmentation'
22-Oct-2025 01:13:45 - Done
Bye for now...
get(ok): sourcedata/raw/sub-125171/anat/sub-125171_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197507/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197507/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.mat (file)
add(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.xml (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/p0sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/wp0sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.mat (file)
add(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.xml (file)
add(ok): sub-125171/report/catlog_sub-125171_acq-headmotion2_T1w.txt (file)
add(ok): sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:37 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:37 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197507/ds/sub-125171/sub-125171_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-125171/sub-125171_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
86s
SPM preprocessing 1 (estimate 2): 75s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 3s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.17) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
137s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 51s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 50s
ROI estimation of 'julichbrain' atlas 67s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 106s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 151s
Write results 153s
671s
Quality check 17s
/var/lib/condor/execute/dir_3197507/ds/sub-125171/report/catreport_sub-125171_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 57 second(s).
Image Quality Rating (IQR): 87.05% (B+)
GM volume (GMV): 46.51% (696.61 / 1497.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/mri
Reports are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/report
Labels are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/label
------------------------------------------------------------------------
22-Oct-2025 01:45:37 - Done 'CAT12: Segmentation'
22-Oct-2025 01:45:37 - Done
Bye for now...
get(ok): sourcedata/raw/sub-125171/anat/sub-125171_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/p0sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-125171/mri/wp0sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197507/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-125171/label/catROI_sub-125171_acq-standard_T1w.mat (file)
add(ok): sub-125171/label/catROI_sub-125171_acq-standard_T1w.xml (file)
add(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/m0wp1sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/mri/mwp1sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/mri/p0sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/wp0sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/report/cat_sub-125171_acq-standard_T1w.mat (file)
add(ok): sub-125171/report/cat_sub-125171_acq-standard_T1w.xml (file)
add(ok): sub-125171/report/catlog_sub-125171_acq-standard_T1w.txt (file)
add(ok): sub-125171/report/catreport_sub-125171_acq-standard_T1w.pdf (file)
add(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/p0sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/wp0sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.mat (file)
add(ok): sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:46:35 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:46:35 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197507/ds/sub-125171/sub-125171_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-125171/sub-125171_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 9s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
114s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.17) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
128s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 50s
ROI estimation of 'julichbrain' atlas 67s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 82s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 116s
Write results 119s
573s
Quality check 16s
/var/lib/condor/execute/dir_3197507/ds/sub-125171/report/catreport_sub-125171_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 58 second(s).
Image Quality Rating (IQR): 87.15% (B+)
GM volume (GMV): 44.81% (670.54 / 1496.28 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/mri
Reports are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/report
Labels are saved in /var/lib/condor/execute/dir_3197507/ds/sub-125171/label
------------------------------------------------------------------------
22-Oct-2025 02:15:36 - Done 'CAT12: Segmentation'
22-Oct-2025 02:15:36 - Done
Bye for now...
get(ok): sourcedata/raw/sub-125171/anat/sub-125171_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-125171/label/catROI_sub-125171_acq-standard_T1w.mat (file)
unlock(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/m0wp1sub-125171_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/mwp1sub-125171_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/p0sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/p0sub-125171_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-125171/mri/wp0sub-125171_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-125171/mri/wp0sub-125171_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-125171/report/cat_sub-125171_acq-standard_T1w.mat (file)
unlock(ok): sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-125171/report/catreport_sub-125171_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197507/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-125171/label/catROI_sub-125171_acq-headmotion1_T1w.mat (file)
add(ok): sub-125171/label/catROI_sub-125171_acq-headmotion1_T1w.xml (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-125171/mri/p0sub-125171_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/wp0sub-125171_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-125171/report/cat_sub-125171_acq-headmotion1_T1w.mat (file)
add(ok): sub-125171/report/cat_sub-125171_acq-headmotion1_T1w.xml (file)
add(ok): sub-125171/report/catlog_sub-125171_acq-headmotion1_T1w.txt (file)
add(ok): sub-125171/report/catreport_sub-125171_acq-headmotion1_T1w.pdf (file)
add(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.mat (file)
add(ok): sub-125171/label/catROI_sub-125171_acq-standard_T1w.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/m0wp1sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/mwp1sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/mri/p0sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/p0sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-125171/mri/wp0sub-125171_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-125171/mri/wp0sub-125171_acq-standard_T1w.nii.gz (file)
add(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.mat (file)
add(ok): sub-125171/report/cat_sub-125171_acq-standard_T1w.mat (file)
add(ok): sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf (file)
add(ok): sub-125171/report/catreport_sub-125171_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-125171/label/catROI_sub-125171_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/label/catROI_sub-125171_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/label/catROI_sub-125171_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/it_sub-125171_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/it_sub-125171_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/it_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/it_sub-125171_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/m0wp1sub-125171_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/m0wp1sub-125171_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/mwp1sub-125171_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/mwp1sub-125171_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/p0sub-125171_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/p0sub-125171_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/p0sub-125171_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/t_sub-125171_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/t_sub-125171_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/t_sub-125171_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/t_sub-125171_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/wp0sub-125171_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/wp0sub-125171_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/mri/wp0sub-125171_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-125171/report/cat_sub-125171_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/report/cat_sub-125171_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/report/cat_sub-125171_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-125171/report/catreport_sub-125171_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-125171/report/catreport_sub-125171_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-125171/report/catreport_sub-125171_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000079 seconds
flock: executing git
SUCCESS