install(ok): /var/lib/condor/execute/dir_3197490/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197490/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197490/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197490/ds/sub-697441/sub-697441_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-697441/sub-697441_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 81s
Affine preprocessing (APP)
Initialize 9s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 8s
52s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
102s
SPM preprocessing 1 (estimate 2): 73s
SPM preprocessing 2 (write)
Write Segmentation 26s
Update Segmentation 19s
Update Skull-Stripping 53s
Update probability maps 10s
108s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 25s
Fast Optimized Shooting registration 8s
118s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 5s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 20s
Estimate local tissue thresholds (WM) 25s
Estimate local tissue thresholds (GM) 30s
Intensity transformation 0s
SANLM denoising after LAS (medium) 37s
125s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 26s
Ventricle detection 24s
Blood vessel detection 13s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 97s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 3s
182s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 43s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.04]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 7s
Level 1 cleanup (brain masking) 5s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 4s
18s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 19s
ROI estimation of 'neuromorphometrics' atlas 69s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 30s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 64s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 89s
Write results 91s
699s
Quality check 18s
/var/lib/condor/execute/dir_3197490/ds/sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 34 minute(s) and 24 second(s).
Image Quality Rating (IQR): 88.10% (B+)
GM volume (GMV): 46.97% (890.02 / 1895.00 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/mri
Reports are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/report
Labels are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/label
------------------------------------------------------------------------
22-Oct-2025 01:15:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:15:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-697441/anat/sub-697441_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197490/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197490/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.mat (file)
add(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.xml (file)
add(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/m0wp1sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/mwp1sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/p0sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/wp0sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.mat (file)
add(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.xml (file)
add(ok): sub-697441/report/catlog_sub-697441_acq-standard_T1w.txt (file)
add(ok): sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:16:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:16:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197490/ds/sub-697441/sub-697441_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-697441/sub-697441_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 80s
Affine preprocessing (APP)
Initialize 9s
Estimate background 9s
Initial correction 9s
Refine background 4s
Final correction 7s
Final scaling 10s
55s
Correct center-of-mass 4s
Affine registration 13s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
100s
SPM preprocessing 1 (estimate 2): 110s
SPM preprocessing 2 (write)
Write Segmentation 26s
Update Segmentation 20s
Update Skull-Stripping 53s
Update probability maps 14s
113s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 24s
Fast Optimized Shooting registration 7s
114s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 5s
Prepare partitions 4s
Prepare segments (LASmod = 1.17) 19s
Estimate local tissue thresholds (WM) 25s
Estimate local tissue thresholds (GM) 29s
Intensity transformation 0s
SANLM denoising after LAS (medium) 37s
123s
ROI segmentation (partitioning)
Atlas -> subject space 11s
Major structures 26s
Ventricle detection 18s
Blood vessel detection 13s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 129s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 4s
209s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 44s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.690.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 7s
Level 1 cleanup (brain masking) 6s
Level 2 cleanup (CSF correction) 3s
Level 3 cleanup (CSF/WM PVE) 4s
19s
23s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 54s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 34s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 74s
Write results 76s
424s
Quality check 19s
/var/lib/condor/execute/dir_3197490/ds/sub-697441/report/catreport_sub-697441_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 34 minute(s) and 9 second(s).
Image Quality Rating (IQR): 86.38% (B)
GM volume (GMV): 45.02% (837.53 / 1860.29 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/mri
Reports are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/report
Labels are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/label
------------------------------------------------------------------------
22-Oct-2025 01:50:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:50:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-697441/anat/sub-697441_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.mat (file)
unlock(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-697441/mri/m0wp1sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/mwp1sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/p0sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-697441/mri/wp0sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.mat (file)
unlock(ok): sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197490/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-697441/label/catROI_sub-697441_acq-headmotion2_T1w.mat (file)
add(ok): sub-697441/label/catROI_sub-697441_acq-headmotion2_T1w.xml (file)
add(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/m0wp1sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/mwp1sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/p0sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/wp0sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/report/cat_sub-697441_acq-headmotion2_T1w.mat (file)
add(ok): sub-697441/report/cat_sub-697441_acq-headmotion2_T1w.xml (file)
add(ok): sub-697441/report/catlog_sub-697441_acq-headmotion2_T1w.txt (file)
add(ok): sub-697441/report/catreport_sub-697441_acq-headmotion2_T1w.pdf (file)
add(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/m0wp1sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/mwp1sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/p0sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/wp0sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.mat (file)
add(ok): sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:51:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:51:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197490/ds/sub-697441/sub-697441_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-697441/sub-697441_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 75s
Affine preprocessing (APP)
Initialize 8s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 8s
52s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
103s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 19s
Update Skull-Stripping 51s
Update probability maps 10s
106s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 5s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 19s
Estimate local tissue thresholds (WM) 25s
Estimate local tissue thresholds (GM) 30s
Intensity transformation 0s
SANLM denoising after LAS (medium) 37s
123s
ROI segmentation (partitioning)
Atlas -> subject space 12s
Major structures 25s
Ventricle detection 29s
Blood vessel detection 12s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 95s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 7s
Final corrections 4s
187s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 41s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 7s
Level 1 cleanup (brain masking) 6s
Level 2 cleanup (CSF correction) 3s
Level 3 cleanup (CSF/WM PVE) 4s
19s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s
Write results 64s
355s
Quality check 16s
/var/lib/condor/execute/dir_3197490/ds/sub-697441/report/catreport_sub-697441_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 56 second(s).
Image Quality Rating (IQR): 87.26% (B+)
GM volume (GMV): 45.29% (843.97 / 1863.45 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/mri
Reports are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/report
Labels are saved in /var/lib/condor/execute/dir_3197490/ds/sub-697441/label
------------------------------------------------------------------------
22-Oct-2025 02:20:20 - Done 'CAT12: Segmentation'
22-Oct-2025 02:20:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-697441/anat/sub-697441_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-697441/label/catROI_sub-697441_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.mat (file)
unlock(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-697441/mri/m0wp1sub-697441_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/m0wp1sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/mwp1sub-697441_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/mwp1sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/p0sub-697441_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/p0sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-697441/mri/wp0sub-697441_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-697441/mri/wp0sub-697441_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-697441/report/cat_sub-697441_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.mat (file)
unlock(ok): sub-697441/report/catreport_sub-697441_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197490/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-697441/label/catROI_sub-697441_acq-headmotion1_T1w.mat (file)
add(ok): sub-697441/label/catROI_sub-697441_acq-headmotion1_T1w.xml (file)
add(ok): sub-697441/mri/it_sub-697441_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/m0wp1sub-697441_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-697441/mri/mwp1sub-697441_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-697441/mri/p0sub-697441_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-697441/mri/t_sub-697441_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/wp0sub-697441_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-697441/report/cat_sub-697441_acq-headmotion1_T1w.mat (file)
add(ok): sub-697441/report/cat_sub-697441_acq-headmotion1_T1w.xml (file)
add(ok): sub-697441/report/catlog_sub-697441_acq-headmotion1_T1w.txt (file)
add(ok): sub-697441/report/catreport_sub-697441_acq-headmotion1_T1w.pdf (file)
add(ok): sub-697441/label/catROI_sub-697441_acq-headmotion2_T1w.mat (file)
add(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/m0wp1sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/m0wp1sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/mwp1sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/mwp1sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/p0sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/p0sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-697441/mri/wp0sub-697441_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-697441/mri/wp0sub-697441_acq-standard_T1w.nii.gz (file)
add(ok): sub-697441/report/cat_sub-697441_acq-headmotion2_T1w.mat (file)
add(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.mat (file)
add(ok): sub-697441/report/catreport_sub-697441_acq-headmotion2_T1w.pdf (file)
add(ok): sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-697441/label/catROI_sub-697441_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/label/catROI_sub-697441_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/label/catROI_sub-697441_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/it_sub-697441_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/it_sub-697441_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/it_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/it_sub-697441_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/m0wp1sub-697441_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/m0wp1sub-697441_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/m0wp1sub-697441_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/mwp1sub-697441_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/mwp1sub-697441_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/mwp1sub-697441_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/p0sub-697441_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/p0sub-697441_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/p0sub-697441_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/t_sub-697441_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/t_sub-697441_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/t_sub-697441_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/t_sub-697441_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/wp0sub-697441_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/wp0sub-697441_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/mri/wp0sub-697441_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-697441/report/cat_sub-697441_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/report/cat_sub-697441_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/report/cat_sub-697441_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-697441/report/catreport_sub-697441_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-697441/report/catreport_sub-697441_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-697441/report/catreport_sub-697441_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000033 seconds
flock: executing git
SUCCESS