install(ok): /var/lib/condor/execute/dir_3197485/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197485/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197485/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197485/ds/sub-281888/sub-281888_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-281888/sub-281888_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 6s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
97s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
100s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 8s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 24s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
108s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 21s
Ventricle detection 21s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 91s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
161s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 19s
ROI estimation of 'neuromorphometrics' atlas 68s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 129s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 146s
Write results 148s
800s
Quality check 16s
/var/lib/condor/execute/dir_3197485/ds/sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 8 second(s).
Image Quality Rating (IQR): 87.82% (B+)
GM volume (GMV): 50.85% (743.51 / 1462.29 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/mri
Reports are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/report
Labels are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/label
------------------------------------------------------------------------
22-Oct-2025 01:14:16 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:16 - Done
Bye for now...
get(ok): sourcedata/raw/sub-281888/anat/sub-281888_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197485/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197485/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.mat (file)
add(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.xml (file)
add(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/m0wp1sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/mwp1sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/p0sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/wp0sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.mat (file)
add(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.xml (file)
add(ok): sub-281888/report/catlog_sub-281888_acq-standard_T1w.txt (file)
add(ok): sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:02 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:02 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197485/ds/sub-281888/sub-281888_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-281888/sub-281888_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 5s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
89s
SPM preprocessing 1 (estimate 2): 79s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
114s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
152s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 69s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 50s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 74s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 104s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 138s
Write results 140s
743s
Quality check 15s
/var/lib/condor/execute/dir_3197485/ds/sub-281888/report/catreport_sub-281888_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 49 second(s).
Image Quality Rating (IQR): 77.85% (C+)
GM volume (GMV): 49.20% (716.72 / 1456.80 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/mri
Reports are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/report
Labels are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/label
------------------------------------------------------------------------
22-Oct-2025 01:46:54 - Done 'CAT12: Segmentation'
22-Oct-2025 01:46:54 - Done
Bye for now...
get(ok): sourcedata/raw/sub-281888/anat/sub-281888_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.mat (file)
unlock(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-281888/mri/m0wp1sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/mwp1sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/p0sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-281888/mri/wp0sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.mat (file)
unlock(ok): sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197485/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-281888/label/catROI_sub-281888_acq-headmotion1_T1w.mat (file)
add(ok): sub-281888/label/catROI_sub-281888_acq-headmotion1_T1w.xml (file)
add(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/m0wp1sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/mwp1sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/p0sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/wp0sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/report/cat_sub-281888_acq-headmotion1_T1w.mat (file)
add(ok): sub-281888/report/cat_sub-281888_acq-headmotion1_T1w.xml (file)
add(ok): sub-281888/report/catlog_sub-281888_acq-headmotion1_T1w.txt (file)
add(ok): sub-281888/report/catreport_sub-281888_acq-headmotion1_T1w.pdf (file)
add(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/m0wp1sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/mwp1sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/p0sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/wp0sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.mat (file)
add(ok): sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:47:41 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:47:41 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197485/ds/sub-281888/sub-281888_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-281888/sub-281888_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 5s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 5s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
97s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 8s
112s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.05) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 64s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
128s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 57s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 42s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 92s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 118s
Write results 121s
607s
Quality check 16s
/var/lib/condor/execute/dir_3197485/ds/sub-281888/report/catreport_sub-281888_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 59 second(s).
Image Quality Rating (IQR): 85.91% (B)
GM volume (GMV): 47.54% (690.15 / 1451.77 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/mri
Reports are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/report
Labels are saved in /var/lib/condor/execute/dir_3197485/ds/sub-281888/label
------------------------------------------------------------------------
22-Oct-2025 02:16:44 - Done 'CAT12: Segmentation'
22-Oct-2025 02:16:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-281888/anat/sub-281888_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-281888/label/catROI_sub-281888_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.mat (file)
unlock(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-281888/mri/m0wp1sub-281888_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/m0wp1sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/mwp1sub-281888_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/mwp1sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/p0sub-281888_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/p0sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-281888/mri/wp0sub-281888_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-281888/mri/wp0sub-281888_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-281888/report/cat_sub-281888_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.mat (file)
unlock(ok): sub-281888/report/catreport_sub-281888_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197485/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-281888/label/catROI_sub-281888_acq-headmotion2_T1w.mat (file)
add(ok): sub-281888/label/catROI_sub-281888_acq-headmotion2_T1w.xml (file)
add(ok): sub-281888/mri/it_sub-281888_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/m0wp1sub-281888_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-281888/mri/mwp1sub-281888_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-281888/mri/p0sub-281888_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-281888/mri/t_sub-281888_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/wp0sub-281888_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-281888/report/cat_sub-281888_acq-headmotion2_T1w.mat (file)
add(ok): sub-281888/report/cat_sub-281888_acq-headmotion2_T1w.xml (file)
add(ok): sub-281888/report/catlog_sub-281888_acq-headmotion2_T1w.txt (file)
add(ok): sub-281888/report/catreport_sub-281888_acq-headmotion2_T1w.pdf (file)
add(ok): sub-281888/label/catROI_sub-281888_acq-headmotion1_T1w.mat (file)
add(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/m0wp1sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/m0wp1sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/mwp1sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/mwp1sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/p0sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/p0sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-281888/mri/wp0sub-281888_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-281888/mri/wp0sub-281888_acq-standard_T1w.nii.gz (file)
add(ok): sub-281888/report/cat_sub-281888_acq-headmotion1_T1w.mat (file)
add(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.mat (file)
add(ok): sub-281888/report/catreport_sub-281888_acq-headmotion1_T1w.pdf (file)
add(ok): sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-281888/label/catROI_sub-281888_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/label/catROI_sub-281888_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/label/catROI_sub-281888_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/it_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/it_sub-281888_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/it_sub-281888_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/it_sub-281888_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/m0wp1sub-281888_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/m0wp1sub-281888_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/m0wp1sub-281888_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/mwp1sub-281888_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/mwp1sub-281888_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/mwp1sub-281888_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/p0sub-281888_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/p0sub-281888_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/p0sub-281888_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/t_sub-281888_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/t_sub-281888_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/t_sub-281888_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/t_sub-281888_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/wp0sub-281888_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/wp0sub-281888_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/mri/wp0sub-281888_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-281888/report/cat_sub-281888_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/report/cat_sub-281888_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/report/cat_sub-281888_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-281888/report/catreport_sub-281888_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-281888/report/catreport_sub-281888_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-281888/report/catreport_sub-281888_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000035 seconds
flock: executing git
SUCCESS