install(ok): /var/lib/condor/execute/dir_3197351/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197351/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197351/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197351/ds/sub-519991/sub-519991_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-519991/sub-519991_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 9s
53s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
97s
SPM preprocessing 1 (estimate 2): 78s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 10s
102s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 7s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
109s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 89s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
158s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 16s
ROI estimation of 'neuromorphometrics' atlas 68s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 50s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 19s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 85s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 139s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 160s
Write results 162s
833s
Quality check 16s
/var/lib/condor/execute/dir_3197351/ds/sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 34 minute(s) and 19 second(s).
Image Quality Rating (IQR): 85.31% (B)
GM volume (GMV): 47.88% (712.62 / 1488.30 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/mri
Reports are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/report
Labels are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/label
------------------------------------------------------------------------
22-Oct-2025 01:15:30 - Done 'CAT12: Segmentation'
22-Oct-2025 01:15:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-519991/anat/sub-519991_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197351/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197351/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.mat (file)
add(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.xml (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/p0sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/wp0sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.mat (file)
add(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.xml (file)
add(ok): sub-519991/report/catlog_sub-519991_acq-headmotion1_T1w.txt (file)
add(ok): sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:16:14 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:16:14 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197351/ds/sub-519991/sub-519991_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-519991/sub-519991_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 73s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 5s
Final correction 6s
Final scaling 7s
50s
Correct center-of-mass 5s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
92s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 10s
101s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 10s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
150s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 62s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 63s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s
Write results 141s
776s
Quality check 16s
/var/lib/condor/execute/dir_3197351/ds/sub-519991/report/catreport_sub-519991_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 1 second(s).
Image Quality Rating (IQR): 87.22% (B+)
GM volume (GMV): 49.49% (736.63 / 1488.50 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/mri
Reports are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/report
Labels are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/label
------------------------------------------------------------------------
22-Oct-2025 01:49:18 - Done 'CAT12: Segmentation'
22-Oct-2025 01:49:18 - Done
Bye for now...
get(ok): sourcedata/raw/sub-519991/anat/sub-519991_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/p0sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-519991/mri/wp0sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197351/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-519991/label/catROI_sub-519991_acq-standard_T1w.mat (file)
add(ok): sub-519991/label/catROI_sub-519991_acq-standard_T1w.xml (file)
add(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/m0wp1sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/mri/mwp1sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/mri/p0sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/wp0sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/report/cat_sub-519991_acq-standard_T1w.mat (file)
add(ok): sub-519991/report/cat_sub-519991_acq-standard_T1w.xml (file)
add(ok): sub-519991/report/catlog_sub-519991_acq-standard_T1w.txt (file)
add(ok): sub-519991/report/catreport_sub-519991_acq-standard_T1w.pdf (file)
add(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/p0sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/wp0sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.mat (file)
add(ok): sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:50:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:50:03 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197351/ds/sub-519991/sub-519991_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-519991/sub-519991_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 5s
Final correction 7s
Final scaling 7s
49s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
90s
SPM preprocessing 1 (estimate 2): 78s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 68s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
137s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 52s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 77s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 103s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 111s
Write results 114s
689s
Quality check 16s
/var/lib/condor/execute/dir_3197351/ds/sub-519991/report/catreport_sub-519991_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 58 second(s).
Image Quality Rating (IQR): 86.79% (B+)
GM volume (GMV): 48.25% (718.19 / 1488.45 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/mri
Reports are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/report
Labels are saved in /var/lib/condor/execute/dir_3197351/ds/sub-519991/label
------------------------------------------------------------------------
22-Oct-2025 02:21:04 - Done 'CAT12: Segmentation'
22-Oct-2025 02:21:04 - Done
Bye for now...
get(ok): sourcedata/raw/sub-519991/anat/sub-519991_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-519991/label/catROI_sub-519991_acq-standard_T1w.mat (file)
unlock(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/m0wp1sub-519991_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/mwp1sub-519991_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/p0sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/p0sub-519991_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-519991/mri/wp0sub-519991_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-519991/mri/wp0sub-519991_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-519991/report/cat_sub-519991_acq-standard_T1w.mat (file)
unlock(ok): sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-519991/report/catreport_sub-519991_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197351/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-519991/label/catROI_sub-519991_acq-headmotion2_T1w.mat (file)
add(ok): sub-519991/label/catROI_sub-519991_acq-headmotion2_T1w.xml (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-519991/mri/p0sub-519991_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/wp0sub-519991_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-519991/report/cat_sub-519991_acq-headmotion2_T1w.mat (file)
add(ok): sub-519991/report/cat_sub-519991_acq-headmotion2_T1w.xml (file)
add(ok): sub-519991/report/catlog_sub-519991_acq-headmotion2_T1w.txt (file)
add(ok): sub-519991/report/catreport_sub-519991_acq-headmotion2_T1w.pdf (file)
add(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.mat (file)
add(ok): sub-519991/label/catROI_sub-519991_acq-standard_T1w.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/m0wp1sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/mwp1sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/mri/p0sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/p0sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-519991/mri/wp0sub-519991_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-519991/mri/wp0sub-519991_acq-standard_T1w.nii.gz (file)
add(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.mat (file)
add(ok): sub-519991/report/cat_sub-519991_acq-standard_T1w.mat (file)
add(ok): sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf (file)
add(ok): sub-519991/report/catreport_sub-519991_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-519991/label/catROI_sub-519991_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/label/catROI_sub-519991_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/label/catROI_sub-519991_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/it_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/it_sub-519991_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/it_sub-519991_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/it_sub-519991_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/m0wp1sub-519991_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/m0wp1sub-519991_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/mwp1sub-519991_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/mwp1sub-519991_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/p0sub-519991_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/p0sub-519991_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/p0sub-519991_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/t_sub-519991_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/t_sub-519991_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/t_sub-519991_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/t_sub-519991_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/wp0sub-519991_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/wp0sub-519991_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/mri/wp0sub-519991_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-519991/report/cat_sub-519991_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/report/cat_sub-519991_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/report/cat_sub-519991_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-519991/report/catreport_sub-519991_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-519991/report/catreport_sub-519991_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-519991/report/catreport_sub-519991_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000035 seconds
flock: executing git
SUCCESS