install(ok): /var/lib/condor/execute/dir_3197349/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197349/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197349/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197349/ds/sub-597083/sub-597083_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-597083/sub-597083_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 7s
50s
Correct center-of-mass 6s
Affine registration 17s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
103s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 18s
Update Skull-Stripping 51s
Update probability maps 10s
103s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 11s
123s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.03) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
113s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 22s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 81s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
152s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 40s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 65s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 80s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 129s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 172s
Write results 175s
812s
Quality check 18s
/var/lib/condor/execute/dir_3197349/ds/sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 53 second(s).
Image Quality Rating (IQR): 84.44% (B)
GM volume (GMV): 46.14% (738.37 / 1600.18 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/mri
Reports are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/report
Labels are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/label
------------------------------------------------------------------------
22-Oct-2025 01:15:02 - Done 'CAT12: Segmentation'
22-Oct-2025 01:15:02 - Done
Bye for now...
get(ok): sourcedata/raw/sub-597083/anat/sub-597083_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197349/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197349/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.mat (file)
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.xml (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/p0sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/wp0sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.mat (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.xml (file)
add(ok): sub-597083/report/catlog_sub-597083_acq-headmotion2_T1w.txt (file)
add(ok): sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:49 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:49 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197349/ds/sub-597083/sub-597083_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-597083/sub-597083_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 7s
50s
Correct center-of-mass 6s
Affine registration 21s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
93s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 18s
Update Skull-Stripping 50s
Update probability maps 10s
103s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 13s
123s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
112s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 22s
Ventricle detection 21s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 95s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
169s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 42s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 4s
16s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 17s
ROI estimation of 'neuromorphometrics' atlas 66s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 126s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 124s
Write results 126s
764s
Quality check 17s
/var/lib/condor/execute/dir_3197349/ds/sub-597083/report/catreport_sub-597083_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 36 second(s).
Image Quality Rating (IQR): 82.29% (B-)
GM volume (GMV): 46.03% (741.30 / 1610.31 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/mri
Reports are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/report
Labels are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/label
------------------------------------------------------------------------
22-Oct-2025 01:49:28 - Done 'CAT12: Segmentation'
22-Oct-2025 01:49:28 - Done
Bye for now...
get(ok): sourcedata/raw/sub-597083/anat/sub-597083_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/p0sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-597083/mri/wp0sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197349/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion1_T1w.mat (file)
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion1_T1w.xml (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/p0sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/wp0sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion1_T1w.mat (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion1_T1w.xml (file)
add(ok): sub-597083/report/catlog_sub-597083_acq-headmotion1_T1w.txt (file)
add(ok): sub-597083/report/catreport_sub-597083_acq-headmotion1_T1w.pdf (file)
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/p0sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/wp0sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.mat (file)
add(ok): sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:50:13 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:50:13 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197349/ds/sub-597083/sub-597083_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-597083/sub-597083_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 7s
Final scaling 7s
49s
Correct center-of-mass 6s
Affine registration 14s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
92s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 10s
101s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.10) 17s
Estimate local tissue thresholds (WM) 24s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
110s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 22s
Ventricle detection 24s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 93s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
171s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
16s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 64s
ROI estimation of 'lpba40' atlas 18s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 58s
ROI estimation of 'julichbrain' atlas 73s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 88s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 88s
Write results 89s
651s
Quality check 14s
/var/lib/condor/execute/dir_3197349/ds/sub-597083/report/catreport_sub-597083_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 20 second(s).
Image Quality Rating (IQR): 87.90% (B+)
GM volume (GMV): 47.61% (762.25 / 1601.06 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/mri
Reports are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/report
Labels are saved in /var/lib/condor/execute/dir_3197349/ds/sub-597083/label
------------------------------------------------------------------------
22-Oct-2025 02:21:35 - Done 'CAT12: Segmentation'
22-Oct-2025 02:21:35 - Done
Bye for now...
get(ok): sourcedata/raw/sub-597083/anat/sub-597083_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-597083/label/catROI_sub-597083_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/p0sub-597083_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/p0sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-597083/mri/wp0sub-597083_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-597083/mri/wp0sub-597083_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-597083/report/cat_sub-597083_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-597083/report/catreport_sub-597083_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197349/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-597083/label/catROI_sub-597083_acq-standard_T1w.mat (file)
add(ok): sub-597083/label/catROI_sub-597083_acq-standard_T1w.xml (file)
add(ok): sub-597083/mri/it_sub-597083_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/m0wp1sub-597083_acq-standard_T1w.nii.gz (file)
add(ok): sub-597083/mri/mwp1sub-597083_acq-standard_T1w.nii.gz (file)
add(ok): sub-597083/mri/p0sub-597083_acq-standard_T1w.nii.gz (file)
add(ok): sub-597083/mri/t_sub-597083_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/wp0sub-597083_acq-standard_T1w.nii.gz (file)
add(ok): sub-597083/report/cat_sub-597083_acq-standard_T1w.mat (file)
add(ok): sub-597083/report/cat_sub-597083_acq-standard_T1w.xml (file)
add(ok): sub-597083/report/catlog_sub-597083_acq-standard_T1w.txt (file)
add(ok): sub-597083/report/catreport_sub-597083_acq-standard_T1w.pdf (file)
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion1_T1w.mat (file)
add(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/p0sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/p0sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-597083/mri/wp0sub-597083_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-597083/mri/wp0sub-597083_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion1_T1w.mat (file)
add(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.mat (file)
add(ok): sub-597083/report/catreport_sub-597083_acq-headmotion1_T1w.pdf (file)
add(ok): sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-597083/label/catROI_sub-597083_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/label/catROI_sub-597083_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/label/catROI_sub-597083_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/it_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/it_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/it_sub-597083_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/it_sub-597083_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/m0wp1sub-597083_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/m0wp1sub-597083_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/mwp1sub-597083_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/mwp1sub-597083_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/p0sub-597083_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/p0sub-597083_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/p0sub-597083_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/t_sub-597083_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/t_sub-597083_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/t_sub-597083_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/t_sub-597083_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/wp0sub-597083_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/wp0sub-597083_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/mri/wp0sub-597083_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-597083/report/cat_sub-597083_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/report/cat_sub-597083_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/report/cat_sub-597083_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-597083/report/catreport_sub-597083_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-597083/report/catreport_sub-597083_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-597083/report/catreport_sub-597083_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000062 seconds
flock: executing git
SUCCESS