install(ok): /var/lib/condor/execute/dir_3197315/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197315/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197315/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:13 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:13 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197315/ds/sub-012322/sub-012322_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-012322/sub-012322_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 7s
Final scaling 7s
50s
Correct center-of-mass 10s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
97s
SPM preprocessing 1 (estimate 2): 79s
SPM preprocessing 2 (write)
Write Segmentation 26s
Update Segmentation 18s
Update Skull-Stripping 51s
Update probability maps 10s
104s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 9s
125s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
107s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 20s
Ventricle detection 21s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
150s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
6s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 62s
ROI estimation of 'lpba40' atlas 21s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 32s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 137s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 168s
Write results 171s
823s
Quality check 18s
/var/lib/condor/execute/dir_3197315/ds/sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 34 minute(s) and 17 second(s).
Image Quality Rating (IQR): 86.56% (B)
GM volume (GMV): 46.93% (698.37 / 1488.09 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/mri
Reports are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/report
Labels are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/label
------------------------------------------------------------------------
22-Oct-2025 01:15:33 - Done 'CAT12: Segmentation'
22-Oct-2025 01:15:33 - Done
Bye for now...
get(ok): sourcedata/raw/sub-012322/anat/sub-012322_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197315/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197315/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.mat (file)
add(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.xml (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/p0sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/wp0sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.mat (file)
add(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.xml (file)
add(ok): sub-012322/report/catlog_sub-012322_acq-headmotion1_T1w.txt (file)
add(ok): sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:16:26 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:16:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197315/ds/sub-012322/sub-012322_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-012322/sub-012322_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 5s
Final correction 6s
Final scaling 6s
49s
Correct center-of-mass 8s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
84s
SPM preprocessing 1 (estimate 2): 77s
SPM preprocessing 2 (write)
Write Segmentation 26s
Update Segmentation 18s
Update Skull-Stripping 50s
Update probability maps 10s
103s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 12s
124s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.13) 17s
Estimate local tissue thresholds (WM) 24s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
112s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 21s
Ventricle detection 22s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
156s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 39s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 59s
ROI estimation of 'lpba40' atlas 18s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 32s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 84s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 13s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 117s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 119s
Write results 122s
743s
Quality check 17s
/var/lib/condor/execute/dir_3197315/ds/sub-012322/report/catreport_sub-012322_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 36 second(s).
Image Quality Rating (IQR): 87.67% (B+)
GM volume (GMV): 47.88% (719.09 / 1501.78 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/mri
Reports are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/report
Labels are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/label
------------------------------------------------------------------------
22-Oct-2025 01:50:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:50:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-012322/anat/sub-012322_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/p0sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-012322/mri/wp0sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197315/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-012322/label/catROI_sub-012322_acq-standard_T1w.mat (file)
add(ok): sub-012322/label/catROI_sub-012322_acq-standard_T1w.xml (file)
add(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/m0wp1sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/mri/mwp1sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/mri/p0sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/wp0sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/report/cat_sub-012322_acq-standard_T1w.mat (file)
add(ok): sub-012322/report/cat_sub-012322_acq-standard_T1w.xml (file)
add(ok): sub-012322/report/catlog_sub-012322_acq-standard_T1w.txt (file)
add(ok): sub-012322/report/catreport_sub-012322_acq-standard_T1w.pdf (file)
add(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/p0sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/wp0sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.mat (file)
add(ok): sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:51:02 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:51:02 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197315/ds/sub-012322/sub-012322_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-012322/sub-012322_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
48s
Correct center-of-mass 7s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
89s
SPM preprocessing 1 (estimate 2): 85s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
100s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
125s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
109s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 20s
Ventricle detection 25s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 89s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
164s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 16s
ROI estimation of 'neuromorphometrics' atlas 62s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 45s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 25s
ROI estimation of 'mori' atlas 37s
ROI estimation of 'anatomy3' atlas 52s
ROI estimation of 'julichbrain' atlas 61s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 42s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 78s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 81s
Write results 83s
591s
Quality check 14s
/var/lib/condor/execute/dir_3197315/ds/sub-012322/report/catreport_sub-012322_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 24 second(s).
Image Quality Rating (IQR): 86.39% (B)
GM volume (GMV): 46.55% (692.38 / 1487.53 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/mri
Reports are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/report
Labels are saved in /var/lib/condor/execute/dir_3197315/ds/sub-012322/label
------------------------------------------------------------------------
22-Oct-2025 02:22:30 - Done 'CAT12: Segmentation'
22-Oct-2025 02:22:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-012322/anat/sub-012322_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-012322/label/catROI_sub-012322_acq-standard_T1w.mat (file)
unlock(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/m0wp1sub-012322_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/mwp1sub-012322_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/p0sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/p0sub-012322_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-012322/mri/wp0sub-012322_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-012322/mri/wp0sub-012322_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-012322/report/cat_sub-012322_acq-standard_T1w.mat (file)
unlock(ok): sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-012322/report/catreport_sub-012322_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197315/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-012322/label/catROI_sub-012322_acq-headmotion2_T1w.mat (file)
add(ok): sub-012322/label/catROI_sub-012322_acq-headmotion2_T1w.xml (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-012322/mri/p0sub-012322_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/wp0sub-012322_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-012322/report/cat_sub-012322_acq-headmotion2_T1w.mat (file)
add(ok): sub-012322/report/cat_sub-012322_acq-headmotion2_T1w.xml (file)
add(ok): sub-012322/report/catlog_sub-012322_acq-headmotion2_T1w.txt (file)
add(ok): sub-012322/report/catreport_sub-012322_acq-headmotion2_T1w.pdf (file)
add(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.mat (file)
add(ok): sub-012322/label/catROI_sub-012322_acq-standard_T1w.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/m0wp1sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/mwp1sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/mri/p0sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/p0sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-012322/mri/wp0sub-012322_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-012322/mri/wp0sub-012322_acq-standard_T1w.nii.gz (file)
add(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.mat (file)
add(ok): sub-012322/report/cat_sub-012322_acq-standard_T1w.mat (file)
add(ok): sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf (file)
add(ok): sub-012322/report/catreport_sub-012322_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-012322/label/catROI_sub-012322_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/label/catROI_sub-012322_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/label/catROI_sub-012322_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/it_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/it_sub-012322_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/it_sub-012322_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/it_sub-012322_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/m0wp1sub-012322_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/m0wp1sub-012322_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/mwp1sub-012322_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/mwp1sub-012322_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/p0sub-012322_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/p0sub-012322_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/p0sub-012322_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/t_sub-012322_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/t_sub-012322_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/t_sub-012322_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/t_sub-012322_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/wp0sub-012322_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/wp0sub-012322_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/mri/wp0sub-012322_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-012322/report/cat_sub-012322_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/report/cat_sub-012322_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/report/cat_sub-012322_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-012322/report/catreport_sub-012322_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-012322/report/catreport_sub-012322_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-012322/report/catreport_sub-012322_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000057 seconds
flock: executing git
SUCCESS