install(ok): /var/lib/condor/execute/dir_1234106/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234106/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234106/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234106/ds/sub-278729/sub-278729_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-278729/sub-278729_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 43s
Update probability maps 8s
87s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.06) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 22s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 81s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
146s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 35s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 105s
Write results 107s
453s
Quality check 15s
/var/lib/condor/execute/dir_1234106/ds/sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 34 second(s).
Image Quality Rating (IQR): 87.72% (B+)
GM volume (GMV): 49.18% (724.06 / 1472.22 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/mri
Reports are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/report
Labels are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/label
------------------------------------------------------------------------
22-Oct-2025 01:05:04 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:04 - Done
Bye for now...
get(ok): sourcedata/raw/sub-278729/anat/sub-278729_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234106/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234106/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.mat (file)
add(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.xml (file)
add(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/m0wp1sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/mwp1sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/p0sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/wp0sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.mat (file)
add(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.xml (file)
add(ok): sub-278729/report/catlog_sub-278729_acq-standard_T1w.txt (file)
add(ok): sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:49 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:49 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234106/ds/sub-278729/sub-278729_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-278729/sub-278729_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
87s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 3s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.08) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 19s
ROI estimation of 'anatomy3' atlas 30s
ROI estimation of 'julichbrain' atlas 40s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 70s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 104s
Write results 106s
415s
Quality check 15s
/var/lib/condor/execute/dir_1234106/ds/sub-278729/report/catreport_sub-278729_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 38 second(s).
Image Quality Rating (IQR): 84.78% (B)
GM volume (GMV): 47.78% (697.51 / 1459.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/mri
Reports are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/report
Labels are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/label
------------------------------------------------------------------------
22-Oct-2025 01:29:30 - Done 'CAT12: Segmentation'
22-Oct-2025 01:29:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-278729/anat/sub-278729_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.mat (file)
unlock(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-278729/mri/m0wp1sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/mwp1sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/p0sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-278729/mri/wp0sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.mat (file)
unlock(ok): sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234106/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-278729/label/catROI_sub-278729_acq-headmotion2_T1w.mat (file)
add(ok): sub-278729/label/catROI_sub-278729_acq-headmotion2_T1w.xml (file)
add(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/m0wp1sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/mwp1sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/p0sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/wp0sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/report/cat_sub-278729_acq-headmotion2_T1w.mat (file)
add(ok): sub-278729/report/cat_sub-278729_acq-headmotion2_T1w.xml (file)
add(ok): sub-278729/report/catlog_sub-278729_acq-headmotion2_T1w.txt (file)
add(ok): sub-278729/report/catreport_sub-278729_acq-headmotion2_T1w.pdf (file)
add(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/m0wp1sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/mwp1sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/p0sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/wp0sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.mat (file)
add(ok): sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:18 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:19 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234106/ds/sub-278729/sub-278729_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-278729/sub-278729_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.06) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
124s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 21s
ROI estimation of 'julichbrain' atlas 28s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 89s
Write results 91s
344s
Quality check 14s
/var/lib/condor/execute/dir_1234106/ds/sub-278729/report/catreport_sub-278729_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 6 second(s).
Image Quality Rating (IQR): 86.57% (B)
GM volume (GMV): 48.65% (713.28 / 1466.03 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/mri
Reports are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/report
Labels are saved in /var/lib/condor/execute/dir_1234106/ds/sub-278729/label
------------------------------------------------------------------------
22-Oct-2025 01:52:27 - Done 'CAT12: Segmentation'
22-Oct-2025 01:52:27 - Done
Bye for now...
get(ok): sourcedata/raw/sub-278729/anat/sub-278729_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-278729/label/catROI_sub-278729_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.mat (file)
unlock(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-278729/mri/m0wp1sub-278729_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/m0wp1sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/mwp1sub-278729_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/mwp1sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/p0sub-278729_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/p0sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-278729/mri/wp0sub-278729_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-278729/mri/wp0sub-278729_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-278729/report/cat_sub-278729_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.mat (file)
unlock(ok): sub-278729/report/catreport_sub-278729_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234106/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-278729/label/catROI_sub-278729_acq-headmotion1_T1w.mat (file)
add(ok): sub-278729/label/catROI_sub-278729_acq-headmotion1_T1w.xml (file)
add(ok): sub-278729/mri/it_sub-278729_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/m0wp1sub-278729_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-278729/mri/mwp1sub-278729_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-278729/mri/p0sub-278729_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-278729/mri/t_sub-278729_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/wp0sub-278729_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-278729/report/cat_sub-278729_acq-headmotion1_T1w.mat (file)
add(ok): sub-278729/report/cat_sub-278729_acq-headmotion1_T1w.xml (file)
add(ok): sub-278729/report/catlog_sub-278729_acq-headmotion1_T1w.txt (file)
add(ok): sub-278729/report/catreport_sub-278729_acq-headmotion1_T1w.pdf (file)
add(ok): sub-278729/label/catROI_sub-278729_acq-headmotion2_T1w.mat (file)
add(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/m0wp1sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/m0wp1sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/mwp1sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/mwp1sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/p0sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/p0sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-278729/mri/wp0sub-278729_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-278729/mri/wp0sub-278729_acq-standard_T1w.nii.gz (file)
add(ok): sub-278729/report/cat_sub-278729_acq-headmotion2_T1w.mat (file)
add(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.mat (file)
add(ok): sub-278729/report/catreport_sub-278729_acq-headmotion2_T1w.pdf (file)
add(ok): sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-278729/label/catROI_sub-278729_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/label/catROI_sub-278729_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/label/catROI_sub-278729_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/it_sub-278729_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/it_sub-278729_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/it_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/it_sub-278729_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/m0wp1sub-278729_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/m0wp1sub-278729_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/m0wp1sub-278729_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/mwp1sub-278729_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/mwp1sub-278729_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/mwp1sub-278729_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/p0sub-278729_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/p0sub-278729_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/p0sub-278729_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/t_sub-278729_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/t_sub-278729_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/t_sub-278729_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/t_sub-278729_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/wp0sub-278729_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/wp0sub-278729_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/mri/wp0sub-278729_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-278729/report/cat_sub-278729_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/report/cat_sub-278729_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/report/cat_sub-278729_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-278729/report/catreport_sub-278729_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-278729/report/catreport_sub-278729_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-278729/report/catreport_sub-278729_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001068 seconds
flock: executing git
SUCCESS