install(ok): /var/lib/condor/execute/dir_1234064/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234064/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234064/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234064/ds/sub-196711/sub-196711_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-196711/sub-196711_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 54s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.07) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.14) 53s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
108s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 35s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 30s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 95s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 112s
Write results 114s
552s
Quality check 13s
/var/lib/condor/execute/dir_1234064/ds/sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 44 second(s).
Image Quality Rating (IQR): 87.53% (B+)
GM volume (GMV): 45.07% (636.48 / 1412.27 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/mri
Reports are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/report
Labels are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/label
------------------------------------------------------------------------
22-Oct-2025 01:06:16 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:16 - Done
Bye for now...
get(ok): sourcedata/raw/sub-196711/anat/sub-196711_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234064/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234064/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.mat (file)
add(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.xml (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/p0sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/wp0sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.mat (file)
add(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.xml (file)
add(ok): sub-196711/report/catlog_sub-196711_acq-headmotion1_T1w.txt (file)
add(ok): sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:59 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:59 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234064/ds/sub-196711/sub-196711_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-196711/sub-196711_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.07) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
92s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.14) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
121s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 44s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 32s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 28s
ROI estimation of 'anatomy3' atlas 41s
ROI estimation of 'julichbrain' atlas 56s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 77s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 80s
Write results 82s
501s
Quality check 13s
/var/lib/condor/execute/dir_1234064/ds/sub-196711/report/catreport_sub-196711_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 6 second(s).
Image Quality Rating (IQR): 88.04% (B+)
GM volume (GMV): 45.75% (643.38 / 1406.33 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/mri
Reports are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/report
Labels are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/label
------------------------------------------------------------------------
22-Oct-2025 01:32:08 - Done 'CAT12: Segmentation'
22-Oct-2025 01:32:08 - Done
Bye for now...
get(ok): sourcedata/raw/sub-196711/anat/sub-196711_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/p0sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-196711/mri/wp0sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234064/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-196711/label/catROI_sub-196711_acq-standard_T1w.mat (file)
add(ok): sub-196711/label/catROI_sub-196711_acq-standard_T1w.xml (file)
add(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/m0wp1sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/mri/mwp1sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/mri/p0sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/wp0sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/report/cat_sub-196711_acq-standard_T1w.mat (file)
add(ok): sub-196711/report/cat_sub-196711_acq-standard_T1w.xml (file)
add(ok): sub-196711/report/catlog_sub-196711_acq-standard_T1w.txt (file)
add(ok): sub-196711/report/catreport_sub-196711_acq-standard_T1w.pdf (file)
add(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/p0sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/wp0sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.mat (file)
add(ok): sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:56 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:56 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234064/ds/sub-196711/sub-196711_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-196711/sub-196711_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 6s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 33s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 77s
Write results 79s
396s
Quality check 13s
/var/lib/condor/execute/dir_1234064/ds/sub-196711/report/catreport_sub-196711_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 26 second(s).
Image Quality Rating (IQR): 86.48% (B)
GM volume (GMV): 44.65% (625.37 / 1400.52 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/mri
Reports are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/report
Labels are saved in /var/lib/condor/execute/dir_1234064/ds/sub-196711/label
------------------------------------------------------------------------
22-Oct-2025 01:56:24 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-196711/anat/sub-196711_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-196711/label/catROI_sub-196711_acq-standard_T1w.mat (file)
unlock(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/m0wp1sub-196711_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/mwp1sub-196711_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/p0sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/p0sub-196711_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-196711/mri/wp0sub-196711_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-196711/mri/wp0sub-196711_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-196711/report/cat_sub-196711_acq-standard_T1w.mat (file)
unlock(ok): sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-196711/report/catreport_sub-196711_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234064/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-196711/label/catROI_sub-196711_acq-headmotion2_T1w.mat (file)
add(ok): sub-196711/label/catROI_sub-196711_acq-headmotion2_T1w.xml (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-196711/mri/p0sub-196711_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/wp0sub-196711_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-196711/report/cat_sub-196711_acq-headmotion2_T1w.mat (file)
add(ok): sub-196711/report/cat_sub-196711_acq-headmotion2_T1w.xml (file)
add(ok): sub-196711/report/catlog_sub-196711_acq-headmotion2_T1w.txt (file)
add(ok): sub-196711/report/catreport_sub-196711_acq-headmotion2_T1w.pdf (file)
add(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.mat (file)
add(ok): sub-196711/label/catROI_sub-196711_acq-standard_T1w.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/m0wp1sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/mwp1sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/mri/p0sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/p0sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-196711/mri/wp0sub-196711_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-196711/mri/wp0sub-196711_acq-standard_T1w.nii.gz (file)
add(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.mat (file)
add(ok): sub-196711/report/cat_sub-196711_acq-standard_T1w.mat (file)
add(ok): sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf (file)
add(ok): sub-196711/report/catreport_sub-196711_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-196711/label/catROI_sub-196711_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/label/catROI_sub-196711_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/label/catROI_sub-196711_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/it_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/it_sub-196711_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/it_sub-196711_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/it_sub-196711_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/m0wp1sub-196711_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/m0wp1sub-196711_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/mwp1sub-196711_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/mwp1sub-196711_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/p0sub-196711_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/p0sub-196711_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/p0sub-196711_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/t_sub-196711_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/t_sub-196711_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/t_sub-196711_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/t_sub-196711_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/wp0sub-196711_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/wp0sub-196711_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/mri/wp0sub-196711_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-196711/report/cat_sub-196711_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/report/cat_sub-196711_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/report/cat_sub-196711_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-196711/report/catreport_sub-196711_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-196711/report/catreport_sub-196711_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-196711/report/catreport_sub-196711_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000919 seconds
flock: executing git
SUCCESS