install(ok): /var/lib/condor/execute/dir_1233953/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233953/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233953/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233953/ds/sub-611047/sub-611047_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-611047/sub-611047_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 7s
44s
Correct center-of-mass 4s
Affine registration 13s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
84s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 8s
89s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 10s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 37s
105s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.15) 71s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
131s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 60s
ROI estimation of 'lpba40' atlas 18s
ROI estimation of 'hammers' atlas 45s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 27s
ROI estimation of 'mori' atlas 40s
ROI estimation of 'anatomy3' atlas 59s
ROI estimation of 'julichbrain' atlas 71s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 42s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 78s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 90s
Write results 92s
612s
Quality check 15s
/var/lib/condor/execute/dir_1233953/ds/sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.66% (B+)
GM volume (GMV): 46.19% (716.68 / 1551.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/mri
Reports are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/report
Labels are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/label
------------------------------------------------------------------------
22-Oct-2025 01:08:38 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:38 - Done
Bye for now...
get(ok): sourcedata/raw/sub-611047/anat/sub-611047_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233953/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233953/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.mat (file)
add(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.xml (file)
add(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/m0wp1sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/mwp1sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/p0sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/wp0sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.mat (file)
add(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.xml (file)
add(ok): sub-611047/report/catlog_sub-611047_acq-standard_T1w.txt (file)
add(ok): sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233953/ds/sub-611047/sub-611047_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-611047/sub-611047_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
46s
Correct center-of-mass 4s
Affine registration 15s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 67s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 8s
88s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.14) 69s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
131s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 46s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 41s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 79s
Write results 81s
442s
Quality check 14s
/var/lib/condor/execute/dir_1233953/ds/sub-611047/report/catreport_sub-611047_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 46 second(s).
Image Quality Rating (IQR): 83.80% (B)
GM volume (GMV): 45.06% (687.38 / 1525.54 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/mri
Reports are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/report
Labels are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/label
------------------------------------------------------------------------
22-Oct-2025 01:35:10 - Done 'CAT12: Segmentation'
22-Oct-2025 01:35:10 - Done
Bye for now...
get(ok): sourcedata/raw/sub-611047/anat/sub-611047_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.mat (file)
unlock(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-611047/mri/m0wp1sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/mwp1sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/p0sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-611047/mri/wp0sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.mat (file)
unlock(ok): sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233953/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-611047/label/catROI_sub-611047_acq-headmotion2_T1w.mat (file)
add(ok): sub-611047/label/catROI_sub-611047_acq-headmotion2_T1w.xml (file)
add(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/m0wp1sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/mwp1sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/p0sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/wp0sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/report/cat_sub-611047_acq-headmotion2_T1w.mat (file)
add(ok): sub-611047/report/cat_sub-611047_acq-headmotion2_T1w.xml (file)
add(ok): sub-611047/report/catlog_sub-611047_acq-headmotion2_T1w.txt (file)
add(ok): sub-611047/report/catreport_sub-611047_acq-headmotion2_T1w.pdf (file)
add(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/m0wp1sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/mwp1sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/p0sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/wp0sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.mat (file)
add(ok): sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:35:53 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:35:53 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233953/ds/sub-611047/sub-611047_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-611047/sub-611047_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
43s
Correct center-of-mass 4s
Affine registration 13s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 45s
Update probability maps 8s
89s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.05) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.16) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
129s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 36s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 53s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 69s
344s
Quality check 14s
/var/lib/condor/execute/dir_1233953/ds/sub-611047/report/catreport_sub-611047_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 18 second(s).
Image Quality Rating (IQR): 86.41% (B)
GM volume (GMV): 44.48% (691.02 / 1553.57 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/mri
Reports are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/report
Labels are saved in /var/lib/condor/execute/dir_1233953/ds/sub-611047/label
------------------------------------------------------------------------
22-Oct-2025 01:59:13 - Done 'CAT12: Segmentation'
22-Oct-2025 01:59:13 - Done
Bye for now...
get(ok): sourcedata/raw/sub-611047/anat/sub-611047_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-611047/label/catROI_sub-611047_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.mat (file)
unlock(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-611047/mri/m0wp1sub-611047_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/m0wp1sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/mwp1sub-611047_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/mwp1sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/p0sub-611047_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/p0sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-611047/mri/wp0sub-611047_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-611047/mri/wp0sub-611047_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-611047/report/cat_sub-611047_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.mat (file)
unlock(ok): sub-611047/report/catreport_sub-611047_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233953/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-611047/label/catROI_sub-611047_acq-headmotion1_T1w.mat (file)
add(ok): sub-611047/label/catROI_sub-611047_acq-headmotion1_T1w.xml (file)
add(ok): sub-611047/mri/it_sub-611047_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/m0wp1sub-611047_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-611047/mri/mwp1sub-611047_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-611047/mri/p0sub-611047_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-611047/mri/t_sub-611047_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/wp0sub-611047_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-611047/report/cat_sub-611047_acq-headmotion1_T1w.mat (file)
add(ok): sub-611047/report/cat_sub-611047_acq-headmotion1_T1w.xml (file)
add(ok): sub-611047/report/catlog_sub-611047_acq-headmotion1_T1w.txt (file)
add(ok): sub-611047/report/catreport_sub-611047_acq-headmotion1_T1w.pdf (file)
add(ok): sub-611047/label/catROI_sub-611047_acq-headmotion2_T1w.mat (file)
add(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/m0wp1sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/m0wp1sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/mwp1sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/mwp1sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/p0sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/p0sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-611047/mri/wp0sub-611047_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-611047/mri/wp0sub-611047_acq-standard_T1w.nii.gz (file)
add(ok): sub-611047/report/cat_sub-611047_acq-headmotion2_T1w.mat (file)
add(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.mat (file)
add(ok): sub-611047/report/catreport_sub-611047_acq-headmotion2_T1w.pdf (file)
add(ok): sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-611047/label/catROI_sub-611047_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/label/catROI_sub-611047_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/label/catROI_sub-611047_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/it_sub-611047_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/it_sub-611047_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/it_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/it_sub-611047_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/m0wp1sub-611047_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/m0wp1sub-611047_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/m0wp1sub-611047_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/mwp1sub-611047_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/mwp1sub-611047_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/mwp1sub-611047_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/p0sub-611047_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/p0sub-611047_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/p0sub-611047_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/t_sub-611047_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/t_sub-611047_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/t_sub-611047_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/t_sub-611047_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/wp0sub-611047_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/wp0sub-611047_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/mri/wp0sub-611047_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-611047/report/cat_sub-611047_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/report/cat_sub-611047_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/report/cat_sub-611047_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-611047/report/catreport_sub-611047_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-611047/report/catreport_sub-611047_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-611047/report/catreport_sub-611047_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000061 seconds
flock: executing git
SUCCESS