install(ok): /var/lib/condor/execute/dir_1233886/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233886/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233886/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233886/ds/sub-508037/sub-508037_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-508037/sub-508037_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 3s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.11) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 53s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
106s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 33s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 71s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 103s
Write results 105s
443s
Quality check 13s
/var/lib/condor/execute/dir_1233886/ds/sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 58 second(s).
Image Quality Rating (IQR): 84.87% (B)
GM volume (GMV): 44.65% (585.45 / 1311.25 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/mri
Reports are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/report
Labels are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/label
------------------------------------------------------------------------
22-Oct-2025 01:03:28 - Done 'CAT12: Segmentation'
22-Oct-2025 01:03:28 - Done
Bye for now...
get(ok): sourcedata/raw/sub-508037/anat/sub-508037_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233886/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233886/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.mat (file)
add(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.xml (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/p0sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/wp0sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.mat (file)
add(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.xml (file)
add(ok): sub-508037/report/catlog_sub-508037_acq-headmotion1_T1w.txt (file)
add(ok): sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:04:11 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:04:11 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233886/ds/sub-508037/sub-508037_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-508037/sub-508037_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
72s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.17) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 64s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
118s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 34s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 94s
Write results 96s
379s
Quality check 13s
/var/lib/condor/execute/dir_1233886/ds/sub-508037/report/catreport_sub-508037_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 20 second(s).
Image Quality Rating (IQR): 87.78% (B+)
GM volume (GMV): 46.00% (607.10 / 1319.86 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/mri
Reports are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/report
Labels are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/label
------------------------------------------------------------------------
22-Oct-2025 01:26:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:26:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-508037/anat/sub-508037_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/p0sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-508037/mri/wp0sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233886/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-508037/label/catROI_sub-508037_acq-standard_T1w.mat (file)
add(ok): sub-508037/label/catROI_sub-508037_acq-standard_T1w.xml (file)
add(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/m0wp1sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/mri/mwp1sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/mri/p0sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/wp0sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/report/cat_sub-508037_acq-standard_T1w.mat (file)
add(ok): sub-508037/report/cat_sub-508037_acq-standard_T1w.xml (file)
add(ok): sub-508037/report/catlog_sub-508037_acq-standard_T1w.txt (file)
add(ok): sub-508037/report/catreport_sub-508037_acq-standard_T1w.pdf (file)
add(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/p0sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/wp0sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.mat (file)
add(ok): sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:27:16 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:27:16 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233886/ds/sub-508037/sub-508037_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-508037/sub-508037_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 8s
45s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 75s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 9s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.46) 12s
Estimate local tissue thresholds (WM) 17s
Estimate local tissue thresholds (GM) 17s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
81s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 10s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
113s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.690.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 28s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 58s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s
Write results 74s
330s
Quality check 12s
/var/lib/condor/execute/dir_1233886/ds/sub-508037/report/catreport_sub-508037_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 21 second(s).
Image Quality Rating (IQR): 83.12% (B-)
GM volume (GMV): 43.72% (566.93 / 1296.63 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/mri
Reports are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/report
Labels are saved in /var/lib/condor/execute/dir_1233886/ds/sub-508037/label
------------------------------------------------------------------------
22-Oct-2025 01:49:39 - Done 'CAT12: Segmentation'
22-Oct-2025 01:49:39 - Done
Bye for now...
get(ok): sourcedata/raw/sub-508037/anat/sub-508037_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-508037/label/catROI_sub-508037_acq-standard_T1w.mat (file)
unlock(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/m0wp1sub-508037_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/mwp1sub-508037_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/p0sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/p0sub-508037_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-508037/mri/wp0sub-508037_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-508037/mri/wp0sub-508037_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-508037/report/cat_sub-508037_acq-standard_T1w.mat (file)
unlock(ok): sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-508037/report/catreport_sub-508037_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233886/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-508037/label/catROI_sub-508037_acq-headmotion2_T1w.mat (file)
add(ok): sub-508037/label/catROI_sub-508037_acq-headmotion2_T1w.xml (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-508037/mri/p0sub-508037_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/wp0sub-508037_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-508037/report/cat_sub-508037_acq-headmotion2_T1w.mat (file)
add(ok): sub-508037/report/cat_sub-508037_acq-headmotion2_T1w.xml (file)
add(ok): sub-508037/report/catlog_sub-508037_acq-headmotion2_T1w.txt (file)
add(ok): sub-508037/report/catreport_sub-508037_acq-headmotion2_T1w.pdf (file)
add(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.mat (file)
add(ok): sub-508037/label/catROI_sub-508037_acq-standard_T1w.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/m0wp1sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/mwp1sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/mri/p0sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/p0sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-508037/mri/wp0sub-508037_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-508037/mri/wp0sub-508037_acq-standard_T1w.nii.gz (file)
add(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.mat (file)
add(ok): sub-508037/report/cat_sub-508037_acq-standard_T1w.mat (file)
add(ok): sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf (file)
add(ok): sub-508037/report/catreport_sub-508037_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-508037/label/catROI_sub-508037_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/label/catROI_sub-508037_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/label/catROI_sub-508037_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/it_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/it_sub-508037_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/it_sub-508037_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/it_sub-508037_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/m0wp1sub-508037_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/m0wp1sub-508037_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/mwp1sub-508037_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/mwp1sub-508037_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/p0sub-508037_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/p0sub-508037_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/p0sub-508037_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/t_sub-508037_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/t_sub-508037_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/t_sub-508037_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/t_sub-508037_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/wp0sub-508037_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/wp0sub-508037_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/mri/wp0sub-508037_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-508037/report/cat_sub-508037_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/report/cat_sub-508037_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/report/cat_sub-508037_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-508037/report/catreport_sub-508037_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-508037/report/catreport_sub-508037_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-508037/report/catreport_sub-508037_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000731 seconds
flock: executing git
SUCCESS