install(ok): /var/lib/condor/execute/dir_1571973/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1571973/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1571973/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:38:59 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:00 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1571973/ds/sub-992121/sub-992121_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-992121/sub-992121_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 3s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 42s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
92s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.01) 15s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 36s
102s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 67s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
131s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 25s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s
Write results 63s
285s
Quality check 13s
/var/lib/condor/execute/dir_1571973/ds/sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 52 second(s).
Image Quality Rating (IQR): 85.10% (B)
GM volume (GMV): 46.70% (774.06 / 1657.45 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/mri
Reports are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/report
Labels are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/label
------------------------------------------------------------------------
22-Oct-2025 00:59:54 - Done 'CAT12: Segmentation'
22-Oct-2025 00:59:54 - Done
Bye for now...
get(ok): sourcedata/raw/sub-992121/anat/sub-992121_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1571973/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1571973/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.mat (file)
add(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.xml (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/p0sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/wp0sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.mat (file)
add(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.xml (file)
add(ok): sub-992121/report/catlog_sub-992121_acq-headmotion2_T1w.txt (file)
add(ok): sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:00:32 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:00:32 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1571973/ds/sub-992121/sub-992121_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-992121/sub-992121_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 3s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 39s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
82s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 8s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.09) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 36s
103s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 21s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 68s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
133s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 25s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s
Write results 63s
283s
Quality check 13s
/var/lib/condor/execute/dir_1571973/ds/sub-992121/report/catreport_sub-992121_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 42 second(s).
Image Quality Rating (IQR): 87.28% (B+)
GM volume (GMV): 47.20% (782.87 / 1658.71 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/mri
Reports are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/report
Labels are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/label
------------------------------------------------------------------------
22-Oct-2025 01:21:17 - Done 'CAT12: Segmentation'
22-Oct-2025 01:21:17 - Done
Bye for now...
get(ok): sourcedata/raw/sub-992121/anat/sub-992121_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/p0sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992121/mri/wp0sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1571973/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-992121/label/catROI_sub-992121_acq-standard_T1w.mat (file)
add(ok): sub-992121/label/catROI_sub-992121_acq-standard_T1w.xml (file)
add(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/m0wp1sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/mri/mwp1sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/mri/p0sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/wp0sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/report/cat_sub-992121_acq-standard_T1w.mat (file)
add(ok): sub-992121/report/cat_sub-992121_acq-standard_T1w.xml (file)
add(ok): sub-992121/report/catlog_sub-992121_acq-standard_T1w.txt (file)
add(ok): sub-992121/report/catreport_sub-992121_acq-standard_T1w.pdf (file)
add(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/p0sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/wp0sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.mat (file)
add(ok): sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:21:55 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:21:55 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1571973/ds/sub-992121/sub-992121_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-992121/sub-992121_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 3s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
70s
SPM preprocessing 1 (estimate 2): 38s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 9s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.07) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 36s
103s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 68s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 2s
129s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 25s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 18s
ROI estimation of 'julichbrain' atlas 24s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 60s
Write results 62s
276s
Quality check 13s
/var/lib/condor/execute/dir_1571973/ds/sub-992121/report/catreport_sub-992121_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 34 second(s).
Image Quality Rating (IQR): 86.88% (B+)
GM volume (GMV): 47.10% (780.11 / 1656.20 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/mri
Reports are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/report
Labels are saved in /var/lib/condor/execute/dir_1571973/ds/sub-992121/label
------------------------------------------------------------------------
22-Oct-2025 01:42:32 - Done 'CAT12: Segmentation'
22-Oct-2025 01:42:32 - Done
Bye for now...
get(ok): sourcedata/raw/sub-992121/anat/sub-992121_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-992121/label/catROI_sub-992121_acq-standard_T1w.mat (file)
unlock(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/m0wp1sub-992121_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/mwp1sub-992121_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/p0sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/p0sub-992121_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992121/mri/wp0sub-992121_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992121/mri/wp0sub-992121_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-992121/report/cat_sub-992121_acq-standard_T1w.mat (file)
unlock(ok): sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-992121/report/catreport_sub-992121_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1571973/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-992121/label/catROI_sub-992121_acq-headmotion1_T1w.mat (file)
add(ok): sub-992121/label/catROI_sub-992121_acq-headmotion1_T1w.xml (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992121/mri/p0sub-992121_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/wp0sub-992121_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992121/report/cat_sub-992121_acq-headmotion1_T1w.mat (file)
add(ok): sub-992121/report/cat_sub-992121_acq-headmotion1_T1w.xml (file)
add(ok): sub-992121/report/catlog_sub-992121_acq-headmotion1_T1w.txt (file)
add(ok): sub-992121/report/catreport_sub-992121_acq-headmotion1_T1w.pdf (file)
add(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.mat (file)
add(ok): sub-992121/label/catROI_sub-992121_acq-standard_T1w.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/m0wp1sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/mwp1sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/mri/p0sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/p0sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-992121/mri/wp0sub-992121_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992121/mri/wp0sub-992121_acq-standard_T1w.nii.gz (file)
add(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.mat (file)
add(ok): sub-992121/report/cat_sub-992121_acq-standard_T1w.mat (file)
add(ok): sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf (file)
add(ok): sub-992121/report/catreport_sub-992121_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-992121/label/catROI_sub-992121_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/label/catROI_sub-992121_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/label/catROI_sub-992121_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/it_sub-992121_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/it_sub-992121_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/it_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/it_sub-992121_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/m0wp1sub-992121_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/m0wp1sub-992121_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/mwp1sub-992121_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/mwp1sub-992121_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/p0sub-992121_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/p0sub-992121_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/p0sub-992121_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/t_sub-992121_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/t_sub-992121_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/t_sub-992121_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/t_sub-992121_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/wp0sub-992121_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/wp0sub-992121_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/mri/wp0sub-992121_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992121/report/cat_sub-992121_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/report/cat_sub-992121_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/report/cat_sub-992121_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992121/report/catreport_sub-992121_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-992121/report/catreport_sub-992121_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-992121/report/catreport_sub-992121_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000875 seconds
flock: executing git
SUCCESS