install(ok): /var/lib/condor/execute/dir_1149313/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149313/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149313/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:26 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149313/ds/sub-680990/sub-680990_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-680990/sub-680990_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
86s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.15) 69s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
133s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 48s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 87s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 85s
Write results 86s
553s
Quality check 14s
/var/lib/condor/execute/dir_1149313/ds/sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 7 second(s).
Image Quality Rating (IQR): 87.66% (B+)
GM volume (GMV): 46.98% (748.38 / 1592.96 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/mri
Reports are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/report
Labels are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/label
------------------------------------------------------------------------
22-Oct-2025 01:06:35 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:35 - Done
Bye for now...
get(ok): sourcedata/raw/sub-680990/anat/sub-680990_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149313/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149313/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.mat (file)
add(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.xml (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/p0sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/wp0sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.mat (file)
add(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.xml (file)
add(ok): sub-680990/report/catlog_sub-680990_acq-headmotion1_T1w.txt (file)
add(ok): sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:07:17 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:07:17 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149313/ds/sub-680990/sub-680990_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-680990/sub-680990_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 84s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
149s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 49s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 34s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 40s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 76s
Write results 77s
447s
Quality check 13s
/var/lib/condor/execute/dir_1149313/ds/sub-680990/report/catreport_sub-680990_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 24 second(s).
Image Quality Rating (IQR): 87.75% (B+)
GM volume (GMV): 47.62% (759.50 / 1594.81 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/mri
Reports are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/report
Labels are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/label
------------------------------------------------------------------------
22-Oct-2025 01:32:43 - Done 'CAT12: Segmentation'
22-Oct-2025 01:32:43 - Done
Bye for now...
get(ok): sourcedata/raw/sub-680990/anat/sub-680990_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/p0sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-680990/mri/wp0sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149313/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-680990/label/catROI_sub-680990_acq-standard_T1w.mat (file)
add(ok): sub-680990/label/catROI_sub-680990_acq-standard_T1w.xml (file)
add(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/m0wp1sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/mri/mwp1sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/mri/p0sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/wp0sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/report/cat_sub-680990_acq-standard_T1w.mat (file)
add(ok): sub-680990/report/cat_sub-680990_acq-standard_T1w.xml (file)
add(ok): sub-680990/report/catlog_sub-680990_acq-standard_T1w.txt (file)
add(ok): sub-680990/report/catreport_sub-680990_acq-standard_T1w.pdf (file)
add(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/p0sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/wp0sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.mat (file)
add(ok): sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:33:24 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:33:25 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149313/ds/sub-680990/sub-680990_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-680990/sub-680990_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.15) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
137s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 26s
ROI estimation of 'julichbrain' atlas 35s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 64s
Write results 65s
356s
Quality check 13s
/var/lib/condor/execute/dir_1149313/ds/sub-680990/report/catreport_sub-680990_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 28 second(s).
Image Quality Rating (IQR): 87.35% (B+)
GM volume (GMV): 46.47% (738.65 / 1589.47 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/mri
Reports are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/report
Labels are saved in /var/lib/condor/execute/dir_1149313/ds/sub-680990/label
------------------------------------------------------------------------
22-Oct-2025 01:56:56 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:56 - Done
Bye for now...
get(ok): sourcedata/raw/sub-680990/anat/sub-680990_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-680990/label/catROI_sub-680990_acq-standard_T1w.mat (file)
unlock(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/m0wp1sub-680990_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/mwp1sub-680990_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/p0sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/p0sub-680990_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-680990/mri/wp0sub-680990_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-680990/mri/wp0sub-680990_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-680990/report/cat_sub-680990_acq-standard_T1w.mat (file)
unlock(ok): sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-680990/report/catreport_sub-680990_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149313/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-680990/label/catROI_sub-680990_acq-headmotion2_T1w.mat (file)
add(ok): sub-680990/label/catROI_sub-680990_acq-headmotion2_T1w.xml (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-680990/mri/p0sub-680990_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/wp0sub-680990_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-680990/report/cat_sub-680990_acq-headmotion2_T1w.mat (file)
add(ok): sub-680990/report/cat_sub-680990_acq-headmotion2_T1w.xml (file)
add(ok): sub-680990/report/catlog_sub-680990_acq-headmotion2_T1w.txt (file)
add(ok): sub-680990/report/catreport_sub-680990_acq-headmotion2_T1w.pdf (file)
add(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.mat (file)
add(ok): sub-680990/label/catROI_sub-680990_acq-standard_T1w.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/m0wp1sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/mwp1sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/mri/p0sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/p0sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-680990/mri/wp0sub-680990_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-680990/mri/wp0sub-680990_acq-standard_T1w.nii.gz (file)
add(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.mat (file)
add(ok): sub-680990/report/cat_sub-680990_acq-standard_T1w.mat (file)
add(ok): sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf (file)
add(ok): sub-680990/report/catreport_sub-680990_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-680990/label/catROI_sub-680990_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/label/catROI_sub-680990_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/label/catROI_sub-680990_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/it_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/it_sub-680990_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/it_sub-680990_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/it_sub-680990_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/m0wp1sub-680990_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/m0wp1sub-680990_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/mwp1sub-680990_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/mwp1sub-680990_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/p0sub-680990_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/p0sub-680990_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/p0sub-680990_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/t_sub-680990_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/t_sub-680990_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/t_sub-680990_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/t_sub-680990_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/wp0sub-680990_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/wp0sub-680990_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/mri/wp0sub-680990_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-680990/report/cat_sub-680990_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/report/cat_sub-680990_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/report/cat_sub-680990_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-680990/report/catreport_sub-680990_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-680990/report/catreport_sub-680990_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-680990/report/catreport_sub-680990_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000655 seconds
flock: executing git
SUCCESS