install(ok): /var/lib/condor/execute/dir_1149168/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149168/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149168/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149168/ds/sub-153486/sub-153486_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-153486/sub-153486_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 9s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.22) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 68s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 42s
ROI estimation of 'julichbrain' atlas 56s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 92s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 121s
Write results 122s
538s
Quality check 14s
/var/lib/condor/execute/dir_1149168/ds/sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 22 second(s).
Image Quality Rating (IQR): 87.81% (B+)
GM volume (GMV): 49.91% (733.43 / 1469.38 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/mri
Reports are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/report
Labels are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/label
------------------------------------------------------------------------
22-Oct-2025 01:05:47 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:47 - Done
Bye for now...
get(ok): sourcedata/raw/sub-153486/anat/sub-153486_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149168/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149168/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.mat (file)
add(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.xml (file)
add(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/m0wp1sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/mwp1sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/p0sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/wp0sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.mat (file)
add(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.xml (file)
add(ok): sub-153486/report/catlog_sub-153486_acq-standard_T1w.txt (file)
add(ok): sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149168/ds/sub-153486/sub-153486_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-153486/sub-153486_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.21) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 70s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
131s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 42s
ROI estimation of 'julichbrain' atlas 54s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 44s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 88s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 92s
Write results 94s
505s
Quality check 14s
/var/lib/condor/execute/dir_1149168/ds/sub-153486/report/catreport_sub-153486_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 50 second(s).
Image Quality Rating (IQR): 87.06% (B+)
GM volume (GMV): 49.98% (733.63 / 1467.87 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/mri
Reports are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/report
Labels are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/label
------------------------------------------------------------------------
22-Oct-2025 01:31:21 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-153486/anat/sub-153486_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.mat (file)
unlock(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-153486/mri/m0wp1sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/mwp1sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/p0sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-153486/mri/wp0sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.mat (file)
unlock(ok): sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149168/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-153486/label/catROI_sub-153486_acq-headmotion1_T1w.mat (file)
add(ok): sub-153486/label/catROI_sub-153486_acq-headmotion1_T1w.xml (file)
add(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/m0wp1sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/mwp1sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/p0sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/wp0sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/report/cat_sub-153486_acq-headmotion1_T1w.mat (file)
add(ok): sub-153486/report/cat_sub-153486_acq-headmotion1_T1w.xml (file)
add(ok): sub-153486/report/catlog_sub-153486_acq-headmotion1_T1w.txt (file)
add(ok): sub-153486/report/catreport_sub-153486_acq-headmotion1_T1w.pdf (file)
add(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/m0wp1sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/mwp1sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/p0sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/wp0sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.mat (file)
add(ok): sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:02 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:02 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149168/ds/sub-153486/sub-153486_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-153486/sub-153486_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.24) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
127s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 50s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 75s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 81s
Write results 83s
452s
Quality check 13s
/var/lib/condor/execute/dir_1149168/ds/sub-153486/report/catreport_sub-153486_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 54 second(s).
Image Quality Rating (IQR): 86.20% (B)
GM volume (GMV): 49.26% (722.56 / 1466.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/mri
Reports are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/report
Labels are saved in /var/lib/condor/execute/dir_1149168/ds/sub-153486/label
------------------------------------------------------------------------
22-Oct-2025 01:55:58 - Done 'CAT12: Segmentation'
22-Oct-2025 01:55:58 - Done
Bye for now...
get(ok): sourcedata/raw/sub-153486/anat/sub-153486_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-153486/label/catROI_sub-153486_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.mat (file)
unlock(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-153486/mri/m0wp1sub-153486_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/m0wp1sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/mwp1sub-153486_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/mwp1sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/p0sub-153486_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/p0sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-153486/mri/wp0sub-153486_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-153486/mri/wp0sub-153486_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-153486/report/cat_sub-153486_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.mat (file)
unlock(ok): sub-153486/report/catreport_sub-153486_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149168/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-153486/label/catROI_sub-153486_acq-headmotion2_T1w.mat (file)
add(ok): sub-153486/label/catROI_sub-153486_acq-headmotion2_T1w.xml (file)
add(ok): sub-153486/mri/it_sub-153486_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/m0wp1sub-153486_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-153486/mri/mwp1sub-153486_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-153486/mri/p0sub-153486_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-153486/mri/t_sub-153486_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/wp0sub-153486_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-153486/report/cat_sub-153486_acq-headmotion2_T1w.mat (file)
add(ok): sub-153486/report/cat_sub-153486_acq-headmotion2_T1w.xml (file)
add(ok): sub-153486/report/catlog_sub-153486_acq-headmotion2_T1w.txt (file)
add(ok): sub-153486/report/catreport_sub-153486_acq-headmotion2_T1w.pdf (file)
add(ok): sub-153486/label/catROI_sub-153486_acq-headmotion1_T1w.mat (file)
add(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/m0wp1sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/m0wp1sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/mwp1sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/mwp1sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/p0sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/p0sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-153486/mri/wp0sub-153486_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-153486/mri/wp0sub-153486_acq-standard_T1w.nii.gz (file)
add(ok): sub-153486/report/cat_sub-153486_acq-headmotion1_T1w.mat (file)
add(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.mat (file)
add(ok): sub-153486/report/catreport_sub-153486_acq-headmotion1_T1w.pdf (file)
add(ok): sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-153486/label/catROI_sub-153486_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/label/catROI_sub-153486_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/label/catROI_sub-153486_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/it_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/it_sub-153486_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/it_sub-153486_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/it_sub-153486_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/m0wp1sub-153486_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/m0wp1sub-153486_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/m0wp1sub-153486_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/mwp1sub-153486_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/mwp1sub-153486_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/mwp1sub-153486_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/p0sub-153486_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/p0sub-153486_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/p0sub-153486_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/t_sub-153486_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/t_sub-153486_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/t_sub-153486_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/t_sub-153486_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/wp0sub-153486_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/wp0sub-153486_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/mri/wp0sub-153486_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-153486/report/cat_sub-153486_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/report/cat_sub-153486_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/report/cat_sub-153486_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-153486/report/catreport_sub-153486_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-153486/report/catreport_sub-153486_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-153486/report/catreport_sub-153486_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001183 seconds
flock: executing git
SUCCESS