install(ok): /var/lib/condor/execute/dir_1887211/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887211/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887211/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:45 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:46 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887211/ds/sub-292213/sub-292213_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-292213/sub-292213_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 7s
46s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 9s
93s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 4s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
101s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 62s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
124s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
6s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 63s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 19s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 143s
Write results 146s
786s
Quality check 18s
/var/lib/condor/execute/dir_1887211/ds/sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 1 second(s).
Image Quality Rating (IQR): 86.64% (B)
GM volume (GMV): 47.23% (715.21 / 1514.26 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/mri
Reports are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/report
Labels are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/label
------------------------------------------------------------------------
22-Oct-2025 01:11:49 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:49 - Done
Bye for now...
get(ok): sourcedata/raw/sub-292213/anat/sub-292213_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887211/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887211/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.mat (file)
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.xml (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/p0sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/wp0sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.mat (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.xml (file)
add(ok): sub-292213/report/catlog_sub-292213_acq-headmotion2_T1w.txt (file)
add(ok): sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:34 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:34 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887211/ds/sub-292213/sub-292213_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-292213/sub-292213_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
45s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
101s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
131s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 56s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 77s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 30s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 114s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 126s
Write results 128s
717s
Quality check 16s
/var/lib/condor/execute/dir_1887211/ds/sub-292213/report/catreport_sub-292213_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 0 second(s).
Image Quality Rating (IQR): 87.50% (B+)
GM volume (GMV): 48.13% (732.59 / 1522.19 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/mri
Reports are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/report
Labels are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/label
------------------------------------------------------------------------
22-Oct-2025 01:42:37 - Done 'CAT12: Segmentation'
22-Oct-2025 01:42:37 - Done
Bye for now...
get(ok): sourcedata/raw/sub-292213/anat/sub-292213_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/p0sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-292213/mri/wp0sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887211/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion1_T1w.mat (file)
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion1_T1w.xml (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/p0sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/wp0sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion1_T1w.mat (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion1_T1w.xml (file)
add(ok): sub-292213/report/catlog_sub-292213_acq-headmotion1_T1w.txt (file)
add(ok): sub-292213/report/catreport_sub-292213_acq-headmotion1_T1w.pdf (file)
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/p0sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/wp0sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.mat (file)
add(ok): sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:43:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:43:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887211/ds/sub-292213/sub-292213_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-292213/sub-292213_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 7s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 21s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
152s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
2s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 46s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 41s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 16s
ROI estimation of 'aal3' atlas 25s
ROI estimation of 'mori' atlas 36s
ROI estimation of 'anatomy3' atlas 51s
ROI estimation of 'julichbrain' atlas 66s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 51s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 83s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 90s
Write results 92s
584s
Quality check 14s
/var/lib/condor/execute/dir_1887211/ds/sub-292213/report/catreport_sub-292213_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 54 second(s).
Image Quality Rating (IQR): 88.09% (B+)
GM volume (GMV): 48.81% (742.48 / 1521.20 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/mri
Reports are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/report
Labels are saved in /var/lib/condor/execute/dir_1887211/ds/sub-292213/label
------------------------------------------------------------------------
22-Oct-2025 02:11:20 - Done 'CAT12: Segmentation'
22-Oct-2025 02:11:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-292213/anat/sub-292213_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-292213/label/catROI_sub-292213_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/p0sub-292213_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/p0sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-292213/mri/wp0sub-292213_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-292213/mri/wp0sub-292213_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-292213/report/cat_sub-292213_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-292213/report/catreport_sub-292213_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887211/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-292213/label/catROI_sub-292213_acq-standard_T1w.mat (file)
add(ok): sub-292213/label/catROI_sub-292213_acq-standard_T1w.xml (file)
add(ok): sub-292213/mri/it_sub-292213_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/m0wp1sub-292213_acq-standard_T1w.nii.gz (file)
add(ok): sub-292213/mri/mwp1sub-292213_acq-standard_T1w.nii.gz (file)
add(ok): sub-292213/mri/p0sub-292213_acq-standard_T1w.nii.gz (file)
add(ok): sub-292213/mri/t_sub-292213_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/wp0sub-292213_acq-standard_T1w.nii.gz (file)
add(ok): sub-292213/report/cat_sub-292213_acq-standard_T1w.mat (file)
add(ok): sub-292213/report/cat_sub-292213_acq-standard_T1w.xml (file)
add(ok): sub-292213/report/catlog_sub-292213_acq-standard_T1w.txt (file)
add(ok): sub-292213/report/catreport_sub-292213_acq-standard_T1w.pdf (file)
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion1_T1w.mat (file)
add(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/p0sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/p0sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-292213/mri/wp0sub-292213_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-292213/mri/wp0sub-292213_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion1_T1w.mat (file)
add(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.mat (file)
add(ok): sub-292213/report/catreport_sub-292213_acq-headmotion1_T1w.pdf (file)
add(ok): sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-292213/label/catROI_sub-292213_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/label/catROI_sub-292213_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/label/catROI_sub-292213_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/it_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/it_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/it_sub-292213_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/it_sub-292213_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/m0wp1sub-292213_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/m0wp1sub-292213_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/mwp1sub-292213_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/mwp1sub-292213_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/p0sub-292213_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/p0sub-292213_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/p0sub-292213_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/t_sub-292213_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/t_sub-292213_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/t_sub-292213_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/t_sub-292213_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/wp0sub-292213_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/wp0sub-292213_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/mri/wp0sub-292213_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-292213/report/cat_sub-292213_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/report/cat_sub-292213_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/report/cat_sub-292213_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-292213/report/catreport_sub-292213_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-292213/report/catreport_sub-292213_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-292213/report/catreport_sub-292213_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000685 seconds
flock: executing git
SUCCESS