install(ok): /var/lib/condor/execute/dir_1887203/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887203/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887203/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887203/ds/sub-630780/sub-630780_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-630780/sub-630780_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
42s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
10s
Use initial fine affine registration. 72s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
89s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 3s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 38s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 16s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 180s
Write results 183s
769s
Quality check 17s
/var/lib/condor/execute/dir_1887203/ds/sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 53 second(s).
Image Quality Rating (IQR): 88.01% (B+)
GM volume (GMV): 47.95% (644.35 / 1343.82 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/mri
Reports are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/report
Labels are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/label
------------------------------------------------------------------------
22-Oct-2025 01:10:38 - Done 'CAT12: Segmentation'
22-Oct-2025 01:10:38 - Done
Bye for now...
get(ok): sourcedata/raw/sub-630780/anat/sub-630780_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887203/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887203/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.mat (file)
add(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.xml (file)
add(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/m0wp1sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/mwp1sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/p0sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/wp0sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.mat (file)
add(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.xml (file)
add(ok): sub-630780/report/catlog_sub-630780_acq-standard_T1w.txt (file)
add(ok): sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:11:32 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:11:32 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887203/ds/sub-630780/sub-630780_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-630780/sub-630780_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
43s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 9s
86s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
92s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
120s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 49s
ROI estimation of 'julichbrain' atlas 70s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 122s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 164s
Write results 167s
674s
Quality check 16s
/var/lib/condor/execute/dir_1887203/ds/sub-630780/report/catreport_sub-630780_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 29 second(s).
Image Quality Rating (IQR): 87.76% (B+)
GM volume (GMV): 46.47% (610.29 / 1313.26 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/mri
Reports are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/report
Labels are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/label
------------------------------------------------------------------------
22-Oct-2025 01:40:05 - Done 'CAT12: Segmentation'
22-Oct-2025 01:40:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-630780/anat/sub-630780_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.mat (file)
unlock(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-630780/mri/m0wp1sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/mwp1sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/p0sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-630780/mri/wp0sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.mat (file)
unlock(ok): sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887203/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-630780/label/catROI_sub-630780_acq-headmotion2_T1w.mat (file)
add(ok): sub-630780/label/catROI_sub-630780_acq-headmotion2_T1w.xml (file)
add(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/m0wp1sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/mwp1sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/p0sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/wp0sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/report/cat_sub-630780_acq-headmotion2_T1w.mat (file)
add(ok): sub-630780/report/cat_sub-630780_acq-headmotion2_T1w.xml (file)
add(ok): sub-630780/report/catlog_sub-630780_acq-headmotion2_T1w.txt (file)
add(ok): sub-630780/report/catreport_sub-630780_acq-headmotion2_T1w.pdf (file)
add(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/m0wp1sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/mwp1sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/p0sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/wp0sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.mat (file)
add(ok): sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887203/ds/sub-630780/sub-630780_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-630780/sub-630780_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 6s
Final scaling 5s
43s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
9s
Use initial fine affine registration. 70s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
87s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 75s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
132s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 28s
ROI estimation of 'julichbrain' atlas 45s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 114s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 153s
Write results 157s
553s
Quality check 16s
/var/lib/condor/execute/dir_1887203/ds/sub-630780/report/catreport_sub-630780_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 36 second(s).
Image Quality Rating (IQR): 87.71% (B+)
GM volume (GMV): 47.05% (620.92 / 1319.81 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/mri
Reports are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/report
Labels are saved in /var/lib/condor/execute/dir_1887203/ds/sub-630780/label
------------------------------------------------------------------------
22-Oct-2025 02:07:45 - Done 'CAT12: Segmentation'
22-Oct-2025 02:07:45 - Done
Bye for now...
get(ok): sourcedata/raw/sub-630780/anat/sub-630780_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-630780/label/catROI_sub-630780_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.mat (file)
unlock(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-630780/mri/m0wp1sub-630780_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/m0wp1sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/mwp1sub-630780_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/mwp1sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/p0sub-630780_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/p0sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-630780/mri/wp0sub-630780_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-630780/mri/wp0sub-630780_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-630780/report/cat_sub-630780_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.mat (file)
unlock(ok): sub-630780/report/catreport_sub-630780_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887203/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-630780/label/catROI_sub-630780_acq-headmotion1_T1w.mat (file)
add(ok): sub-630780/label/catROI_sub-630780_acq-headmotion1_T1w.xml (file)
add(ok): sub-630780/mri/it_sub-630780_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/m0wp1sub-630780_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-630780/mri/mwp1sub-630780_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-630780/mri/p0sub-630780_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-630780/mri/t_sub-630780_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/wp0sub-630780_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-630780/report/cat_sub-630780_acq-headmotion1_T1w.mat (file)
add(ok): sub-630780/report/cat_sub-630780_acq-headmotion1_T1w.xml (file)
add(ok): sub-630780/report/catlog_sub-630780_acq-headmotion1_T1w.txt (file)
add(ok): sub-630780/report/catreport_sub-630780_acq-headmotion1_T1w.pdf (file)
add(ok): sub-630780/label/catROI_sub-630780_acq-headmotion2_T1w.mat (file)
add(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/m0wp1sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/m0wp1sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/mwp1sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/mwp1sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/p0sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/p0sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-630780/mri/wp0sub-630780_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-630780/mri/wp0sub-630780_acq-standard_T1w.nii.gz (file)
add(ok): sub-630780/report/cat_sub-630780_acq-headmotion2_T1w.mat (file)
add(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.mat (file)
add(ok): sub-630780/report/catreport_sub-630780_acq-headmotion2_T1w.pdf (file)
add(ok): sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-630780/label/catROI_sub-630780_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/label/catROI_sub-630780_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/label/catROI_sub-630780_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/it_sub-630780_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/it_sub-630780_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/it_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/it_sub-630780_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/m0wp1sub-630780_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/m0wp1sub-630780_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/m0wp1sub-630780_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/mwp1sub-630780_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/mwp1sub-630780_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/mwp1sub-630780_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/p0sub-630780_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/p0sub-630780_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/p0sub-630780_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/t_sub-630780_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/t_sub-630780_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/t_sub-630780_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/t_sub-630780_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/wp0sub-630780_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/wp0sub-630780_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/mri/wp0sub-630780_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-630780/report/cat_sub-630780_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/report/cat_sub-630780_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/report/cat_sub-630780_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-630780/report/catreport_sub-630780_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-630780/report/catreport_sub-630780_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-630780/report/catreport_sub-630780_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000050 seconds
flock: executing git
SUCCESS