install(ok): /var/lib/condor/execute/dir_1886991/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1886991/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886991/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:40 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:41 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886991/ds/sub-602346/sub-602346_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-602346/sub-602346_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
87s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 10s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.12) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 67s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
128s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 26s
ROI estimation of 'julichbrain' atlas 42s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 74s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 107s
Write results 109s
421s
Quality check 14s
/var/lib/condor/execute/dir_1886991/ds/sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.89% (B+)
GM volume (GMV): 46.52% (633.47 / 1361.58 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/mri
Reports are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/report
Labels are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/label
------------------------------------------------------------------------
22-Oct-2025 01:04:47 - Done 'CAT12: Segmentation'
22-Oct-2025 01:04:47 - Done
Bye for now...
get(ok): sourcedata/raw/sub-602346/anat/sub-602346_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886991/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1886991/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.mat (file)
add(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.xml (file)
add(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/m0wp1sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/mwp1sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/p0sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/wp0sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.mat (file)
add(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.xml (file)
add(ok): sub-602346/report/catlog_sub-602346_acq-standard_T1w.txt (file)
add(ok): sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886991/ds/sub-602346/sub-602346_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-602346/sub-602346_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
87s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.15) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 67s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 76s
Write results 78s
318s
Quality check 14s
/var/lib/condor/execute/dir_1886991/ds/sub-602346/report/catreport_sub-602346_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 44 second(s).
Image Quality Rating (IQR): 86.66% (B)
GM volume (GMV): 44.90% (606.93 / 1351.69 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/mri
Reports are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/report
Labels are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/label
------------------------------------------------------------------------
22-Oct-2025 01:27:30 - Done 'CAT12: Segmentation'
22-Oct-2025 01:27:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-602346/anat/sub-602346_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.mat (file)
unlock(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-602346/mri/m0wp1sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/mwp1sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/p0sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-602346/mri/wp0sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.mat (file)
unlock(ok): sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886991/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-602346/label/catROI_sub-602346_acq-headmotion2_T1w.mat (file)
add(ok): sub-602346/label/catROI_sub-602346_acq-headmotion2_T1w.xml (file)
add(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/m0wp1sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/mwp1sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/p0sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/wp0sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/report/cat_sub-602346_acq-headmotion2_T1w.mat (file)
add(ok): sub-602346/report/cat_sub-602346_acq-headmotion2_T1w.xml (file)
add(ok): sub-602346/report/catlog_sub-602346_acq-headmotion2_T1w.txt (file)
add(ok): sub-602346/report/catreport_sub-602346_acq-headmotion2_T1w.pdf (file)
add(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/m0wp1sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/mwp1sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/p0sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/wp0sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.mat (file)
add(ok): sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:28:26 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:28:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886991/ds/sub-602346/sub-602346_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-602346/sub-602346_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 7s
45s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 62s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
120s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 68s
310s
Quality check 13s
/var/lib/condor/execute/dir_1886991/ds/sub-602346/report/catreport_sub-602346_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 45 second(s).
Image Quality Rating (IQR): 86.81% (B+)
GM volume (GMV): 45.93% (624.40 / 1359.59 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/mri
Reports are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/report
Labels are saved in /var/lib/condor/execute/dir_1886991/ds/sub-602346/label
------------------------------------------------------------------------
22-Oct-2025 01:50:14 - Done 'CAT12: Segmentation'
22-Oct-2025 01:50:14 - Done
Bye for now...
get(ok): sourcedata/raw/sub-602346/anat/sub-602346_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-602346/label/catROI_sub-602346_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.mat (file)
unlock(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-602346/mri/m0wp1sub-602346_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/m0wp1sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/mwp1sub-602346_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/mwp1sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/p0sub-602346_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/p0sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-602346/mri/wp0sub-602346_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-602346/mri/wp0sub-602346_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-602346/report/cat_sub-602346_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.mat (file)
unlock(ok): sub-602346/report/catreport_sub-602346_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886991/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-602346/label/catROI_sub-602346_acq-headmotion1_T1w.mat (file)
add(ok): sub-602346/label/catROI_sub-602346_acq-headmotion1_T1w.xml (file)
add(ok): sub-602346/mri/it_sub-602346_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/m0wp1sub-602346_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-602346/mri/mwp1sub-602346_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-602346/mri/p0sub-602346_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-602346/mri/t_sub-602346_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/wp0sub-602346_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-602346/report/cat_sub-602346_acq-headmotion1_T1w.mat (file)
add(ok): sub-602346/report/cat_sub-602346_acq-headmotion1_T1w.xml (file)
add(ok): sub-602346/report/catlog_sub-602346_acq-headmotion1_T1w.txt (file)
add(ok): sub-602346/report/catreport_sub-602346_acq-headmotion1_T1w.pdf (file)
add(ok): sub-602346/label/catROI_sub-602346_acq-headmotion2_T1w.mat (file)
add(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/m0wp1sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/m0wp1sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/mwp1sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/mwp1sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/p0sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/p0sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-602346/mri/wp0sub-602346_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-602346/mri/wp0sub-602346_acq-standard_T1w.nii.gz (file)
add(ok): sub-602346/report/cat_sub-602346_acq-headmotion2_T1w.mat (file)
add(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.mat (file)
add(ok): sub-602346/report/catreport_sub-602346_acq-headmotion2_T1w.pdf (file)
add(ok): sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-602346/label/catROI_sub-602346_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/label/catROI_sub-602346_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/label/catROI_sub-602346_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/it_sub-602346_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/it_sub-602346_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/it_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/it_sub-602346_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/m0wp1sub-602346_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/m0wp1sub-602346_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/m0wp1sub-602346_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/mwp1sub-602346_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/mwp1sub-602346_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/mwp1sub-602346_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/p0sub-602346_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/p0sub-602346_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/p0sub-602346_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/t_sub-602346_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/t_sub-602346_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/t_sub-602346_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/t_sub-602346_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/wp0sub-602346_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/wp0sub-602346_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/mri/wp0sub-602346_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-602346/report/cat_sub-602346_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/report/cat_sub-602346_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/report/cat_sub-602346_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-602346/report/catreport_sub-602346_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-602346/report/catreport_sub-602346_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-602346/report/catreport_sub-602346_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000885 seconds
flock: executing git
SUCCESS